Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03540 - ( ATEXO70A1 (exocyst subunit EXO70 family protein A1) protein binding )
29 Proteins interacs with AT5G03540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G71820 | Experimental | FSW = 0.0664
| Class A:plasma membraneClass D:plastid (p = 0.78)cytosol (p = 0.67) | SEC6 |
AT3G10380 | Experimentalmolecular sievingconfocal microscopy | FSW = 0.1212
| Class A:plasma membraneClass D:cytosol (p = 0.67) | SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) |
AT1G47550 | Experimental | FSW = 0.0455
| Class A:plasma membraneClass D:cytosol (p = 0.67) | UNKNOWN PROTEIN |
AT2G37270 | PredictedSynthetic RescueSynthetic RescuePhenotypic Suppressioninterologs mappingPhenotypic SuppressionSynthetic Rescue | FSW = 0.1041
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G32360 | PredictedSynthetic Lethality | FSW = 0.0574
| Class C:plasma membrane | NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE |
AT1G75170 | Predictedinterologs mapping | FSW = 0.1081
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G39480 | PredictedReconstituted Complex | FSW = 0.0976
| Class C:plasma membrane | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G09590 | PredictedSynthetic Rescueinterologs mappingSynthetic RescueSynthetic Lethality | FSW = 0.0576
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G33140 | PredictedReconstituted Complex | FSW = 0.0793
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G57050 | PredictedAffinity Capture-Western | FSW = 0.0697
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT3G21540 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.1879
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-WesternSynthetic LethalityReconstituted ComplexPhenotypic SuppressionSynthetic Rescue | FSW = 0.0687
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G04510 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G40290 | PredictedPhenotypic SuppressionSynthetic Lethality | FSW = 0.0138
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G15090 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G01020 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-crystal Structureinterologs mapping | FSW = 0.2247
| Unknown | ARV1 |
AT2G29100 | PredictedReconstituted Complex | FSW = 0.0992
| Unknown | ATGLR29 INTRACELLULAR LIGAND-GATED ION CHANNEL |
AT3G29130 | Predictedtwo hybrid | FSW = 0.0727
| Unknown | UNKNOWN PROTEIN |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.1629
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT3G16840 | PredictedPhenotypic Suppression | FSW = 0.0181
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.1440
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT1G08260 | PredictedPhenotypic Suppression | FSW = 0.0488
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT3G12490 | PredictedSynthetic Rescue | FSW = 0.1232
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT4G02120 | Predictedinterologs mappinginterologs mapping | FSW = 0.2865
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G43340 | Predictedinterologs mapping | FSW = 0.1176
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G46280 | Predictedinterologs mapping | FSW = 0.1142
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G19360 | PredictedPhenotypic Suppression | FSW = 0.0401
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76690 | Predictedtwo hybrid | FSW = 0.0625
| Unknown | OPR2 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454