Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03650 - ( SBE22 (starch branching enzyme 22) 14-alpha-glucan branching enzyme )

47 Proteins interacs with AT5G03650
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G33140

Predicted

Synthetic Lethality

FSW = 0.0321

Class C:

plastid

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G01410

Predicted

Synthetic Lethality

FSW = 0.1210

Class C:

plastid

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT5G19830

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0606

Class C:

plastid

AMINOACYL-TRNA HYDROLASE
AT2G43030

Predicted

Affinity Capture-MS

FSW = 0.1204

Class C:

plastid

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT3G57050

Predicted

Synthetic Lethality

FSW = 0.0635

Class C:

plastid

CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE
AT5G12010

Predicted

Affinity Capture-MS

FSW = 0.0114

Unknown

UNKNOWN PROTEIN
AT4G34700

Predicted

two hybrid

FSW = 0.0320

Unknown

COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN
AT3G58500

Predicted

two hybrid

FSW = 0.0181

Unknown

PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G47510

Predicted

synthetic growth defect

FSW = 0.1322

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G04750

Predicted

synthetic growth defect

FSW = 0.0680

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G10430

Predicted

two hybrid

two hybrid

FSW = 0.0112

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G18800

Predicted

Affinity Capture-MS

FSW = 0.0599

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT1G76300

Predicted

Synthetic Lethality

FSW = 0.0829

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G18600

Predicted

Phenotypic Enhancement

FSW = 0.0329

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G72560

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0463

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G38880

Predicted

Affinity Capture-MS

FSW = 0.0973

Unknown

NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT1G29330

Predicted

Synthetic Lethality

FSW = 0.0333

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT4G33710

Predicted

Affinity Capture-MS

FSW = 0.0490

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G17800

Predicted

two hybrid

FSW = 0.0644

Unknown

ARAC1 GTP BINDING
AT5G59720

Predicted

Synthetic Lethality

FSW = 0.0535

Unknown

HSP182 (HEAT SHOCK PROTEIN 182)
AT2G29540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1300

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G77990

Predicted

Affinity Capture-MS

FSW = 0.1477

Unknown

AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G60730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1243

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G80710

Predicted

Dosage Growth Defect

FSW = 0.0690

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G30800

Predicted

Affinity Capture-MS

FSW = 0.1322

Unknown

HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G43190

Predicted

Dosage Growth Defect

FSW = 0.0548

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT2G44530

Predicted

Phenotypic Enhancement

FSW = 0.0271

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE
AT4G19880

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0720

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT1G55060

Predicted

Synthetic Lethality

FSW = 0.0331

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G55810

Predicted

Synthetic Lethality

FSW = 0.1038

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G74810

Predicted

Synthetic Lethality

FSW = 0.0685

Unknown

BOR5 ANION EXCHANGER
AT1G80500

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0195

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G15910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1951

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.1352

Unknown

XIF MOTOR
AT2G32415

Predicted

Affinity Capture-MS

FSW = 0.0484

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.1461

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G13060

Predicted

Affinity Capture-MS

FSW = 0.0235

Unknown

ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK)
AT3G18850

Predicted

Affinity Capture-MS

FSW = 0.1050

Unknown

LPAT5 ACYLTRANSFERASE
AT3G24010

Predicted

Synthetic Lethality

FSW = 0.0603

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G25900

Predicted

synthetic growth defect

FSW = 0.0242

Unknown

HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G50780

Predicted

Affinity Capture-MS

FSW = 0.1458

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT3G53030

Predicted

synthetic growth defect

FSW = 0.0547

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G04700

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0880

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G30540

Predicted

Synthetic Lethality

FSW = 0.0424

Unknown

GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT5G41700

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0649

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G52200

Predicted

Synthetic Lethality

FSW = 0.0392

Unknown

UNKNOWN PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454