Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03650 - ( SBE22 (starch branching enzyme 22) 14-alpha-glucan branching enzyme )
47 Proteins interacs with AT5G03650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedSynthetic Lethality | FSW = 0.0321
| Class C:plastid | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G01410 | PredictedSynthetic Lethality | FSW = 0.1210
| Class C:plastid | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT5G19830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0606
| Class C:plastid | AMINOACYL-TRNA HYDROLASE |
AT2G43030 | PredictedAffinity Capture-MS | FSW = 0.1204
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT3G57050 | PredictedSynthetic Lethality | FSW = 0.0635
| Class C:plastid | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT5G12010 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | UNKNOWN PROTEIN |
AT4G34700 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G47510 | Predictedsynthetic growth defect | FSW = 0.1322
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.0680
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G10430 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G18800 | PredictedAffinity Capture-MS | FSW = 0.0599
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT1G76300 | PredictedSynthetic Lethality | FSW = 0.0829
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G18600 | PredictedPhenotypic Enhancement | FSW = 0.0329
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G72560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0463
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.0973
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT1G29330 | PredictedSynthetic Lethality | FSW = 0.0333
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G17800 | Predictedtwo hybrid | FSW = 0.0644
| Unknown | ARAC1 GTP BINDING |
AT5G59720 | PredictedSynthetic Lethality | FSW = 0.0535
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1300
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT1G60730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1243
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G80710 | PredictedDosage Growth Defect | FSW = 0.0690
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G30800 | PredictedAffinity Capture-MS | FSW = 0.1322
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G43190 | PredictedDosage Growth Defect | FSW = 0.0548
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G44530 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT4G19880 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0720
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT1G55060 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55810 | PredictedSynthetic Lethality | FSW = 0.1038
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.0685
| Unknown | BOR5 ANION EXCHANGER |
AT1G80500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G15910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1951
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.1352
| Unknown | XIF MOTOR |
AT2G32415 | PredictedAffinity Capture-MS | FSW = 0.0484
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.1461
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.0603
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defect | FSW = 0.0242
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.1458
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.0547
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G04700 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0880
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G30540 | PredictedSynthetic Lethality | FSW = 0.0424
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
AT5G41700 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0649
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G52200 | PredictedSynthetic Lethality | FSW = 0.0392
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454