Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03790 - ( HB51 DNA binding / sequence-specific DNA binding / transcription factor )
13 Proteins interacs with AT5G03790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G14040 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | MITOCHONDRIAL PHOSPHATE TRANSPORTER |
AT1G31780 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G00100 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | REPLICATION PROTEIN-RELATED |
AT3G07880 | Predictedtwo hybrid | FSW = 0.0333
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT5G52650 | Predictedtwo hybrid | FSW = 0.0706
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10C) |
AT5G53360 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | UNKNOWN PROTEIN |
AT5G06600 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G13400 | Predictedtwo hybrid | FSW = 0.0227
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G51290 | Predictedtwo hybrid | FSW = 0.0443
| Unknown | CERAMIDE KINASE-RELATED |
AT5G22840 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454