Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03850 - ( 40S ribosomal protein S28 (RPS28B) )

7 Proteins interacs with AT5G03850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0031

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G27720

Predicted

two hybrid

FSW = 0.0420

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G03330

Predicted

two hybrid

FSW = 0.0356

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT5G64140

Predicted

Gene fusion method

Co-expression

FSW = 0.0937

Unknown

RPS28 (RIBOSOMAL PROTEIN S28) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G26270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0410

Unknown

PFK3 (PHOSPHOFRUCTOKINASE 3) 6-PHOSPHOFRUCTOKINASE
AT1G10090

Predicted

synthetic growth defect

FSW = 0.0135

Unknown

UNKNOWN PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454