Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G03860 - ( MLS (MALATE SYNTHASE) malate synthase )

13 Proteins interacs with AT5G03860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

pull down

FSW = 0.0189

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT2G39930

Predicted

pull down

FSW = 0.1429

Unknown

ISA1 (ISOAMYLASE 1) ALPHA-AMYLASE/ ISOAMYLASE
AT3G11510

Predicted

interologs mapping

FSW = 0.0261

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT4G20440

Predicted

Phenotypic Enhancement

FSW = 0.0867

Unknown

SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
AT1G03090

Predicted

interologs mapping

interaction prediction

FSW = 0.0714

Unknown

MCCA METHYLCROTONOYL-COA CARBOXYLASE
AT4G26910

Predicted

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.0658

Unknown

2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT2G31970

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0069

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G46900

Predicted

Phenotypic Enhancement

FSW = 0.3951

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BASIC HELIX-LOOP-HELIX NULP1-TYPE (INTERPROIPR006994) HAS 3014 BLAST HITS TO 2357 PROTEINS IN 239 SPECIES ARCHAE - 2 BACTERIA - 96 METAZOA - 1166 FUNGI - 321 PLANTS - 100 VIRUSES - 47 OTHER EUKARYOTES - 1282 (SOURCE NCBI BLINK)
AT3G18850

Predicted

Synthetic Rescue

FSW = 0.0284

Unknown

LPAT5 ACYLTRANSFERASE
AT1G70290

Predicted

biochemical

FSW = 0.0149

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT3G06483

Predicted

biochemical

FSW = 0.0206

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT5G16170

Predicted

Synthetic Lethality

FSW = 0.0523

Unknown

UNKNOWN PROTEIN
AT5G24840

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0085

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454