Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G03860 - ( MLS (MALATE SYNTHASE) malate synthase )
13 Proteins interacs with AT5G03860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G41790 | Predictedpull down | FSW = 0.0189
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT2G39930 | Predictedpull down | FSW = 0.1429
| Unknown | ISA1 (ISOAMYLASE 1) ALPHA-AMYLASE/ ISOAMYLASE |
AT3G11510 | Predictedinterologs mapping | FSW = 0.0261
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT4G20440 | PredictedPhenotypic Enhancement | FSW = 0.0867
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT1G03090 | Predictedinterologs mappinginteraction prediction | FSW = 0.0714
| Unknown | MCCA METHYLCROTONOYL-COA CARBOXYLASE |
AT4G26910 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0658
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT2G31970 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0069
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT2G46900 | PredictedPhenotypic Enhancement | FSW = 0.3951
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BASIC HELIX-LOOP-HELIX NULP1-TYPE (INTERPROIPR006994) HAS 3014 BLAST HITS TO 2357 PROTEINS IN 239 SPECIES ARCHAE - 2 BACTERIA - 96 METAZOA - 1166 FUNGI - 321 PLANTS - 100 VIRUSES - 47 OTHER EUKARYOTES - 1282 (SOURCE NCBI BLINK) |
AT3G18850 | PredictedSynthetic Rescue | FSW = 0.0284
| Unknown | LPAT5 ACYLTRANSFERASE |
AT1G70290 | Predictedbiochemical | FSW = 0.0149
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G06483 | Predictedbiochemical | FSW = 0.0206
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT5G16170 | PredictedSynthetic Lethality | FSW = 0.0523
| Unknown | UNKNOWN PROTEIN |
AT5G24840 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Western | FSW = 0.0085
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454