Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04130 - ( DNA topoisomerase ATP-hydrolyzing putative / DNA topoisomerase II putative / DNA gyrase putative )

10 Proteins interacs with AT5G04130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G10690

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.4180

Class C:

mitochondrion

DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT3G48110

Predicted

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FSW = 0.2657

Class C:

mitochondrion

EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) GLYCINE-TRNA LIGASE
AT4G02930

Predicted

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FSW = 0.1414

Class C:

mitochondrion

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT3G10270Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1015

Class C:

mitochondrion

ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)
AT1G67940

Predicted

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FSW = 0.1817

Unknown

ATNAP3 TRANSPORTER
AT2G33800

Predicted

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FSW = 0.0912

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
ATCG00160Predicted

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FSW = 0.0724

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
AT2G36880

Predicted

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FSW = 0.1021

Unknown

MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT3G22310

Predicted

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FSW = 0.0678

Unknown

PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT2G31955

Predicted

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FSW = 0.1817

Unknown

CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) CATALYTIC

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454