Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04740 - ( ACT domain-containing protein )

10 Proteins interacs with AT5G04740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02090

Predicted

Affinity Capture-MS

FSW = 0.0275

Class C:

plastid

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT5G09590

Predicted

two hybrid

FSW = 0.0054

Class C:

plastid

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G12010

Predicted

two hybrid

FSW = 0.0440

Unknown

UNKNOWN PROTEIN
AT5G02490

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0112

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT5G53540

Predicted

two hybrid

FSW = 0.0556

Unknown

MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE
AT3G56640

Predicted

two hybrid

FSW = 0.0135

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT5G03560

Predicted

two hybrid

FSW = 0.1426

Unknown

NUCLEOBASECATION SYMPORTER
AT5G08420

Predicted

two hybrid

FSW = 0.0128

Unknown

RNA BINDING
AT5G26180

Predicted

two hybrid

FSW = 0.0585

Unknown

NOL1/NOP2/SUN FAMILY PROTEIN
AT4G22720

Predicted

Affinity Capture-MS

FSW = 0.1131

Unknown

GLYCOPROTEASE M22 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454