Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04800 - ( 40S ribosomal protein S17 (RPS17D) )

80 Proteins interacs with AT5G04800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

two hybrid

FSW = 0.0084

Unknown

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.1335

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G09440

Predicted

Phenotypic Enhancement

FSW = 0.0164

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT3G15710

Predicted

two hybrid

FSW = 0.1634

Unknown

SIGNAL PEPTIDASE PUTATIVE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0446

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0525

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G20620

Predicted

Affinity Capture-Western

FSW = 0.0080

Unknown

CAT3 (CATALASE 3) CATALASE
AT4G33650

Predicted

Phenotypic Suppression

FSW = 0.0730

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G09660

Predicted

Phenotypic Enhancement

FSW = 0.1602

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT5G19830

Predicted

Phenotypic Suppression

FSW = 0.0625

Unknown

AMINOACYL-TRNA HYDROLASE
AT1G74710

Predicted

synthetic growth defect

FSW = 0.1371

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.0568

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT1G77750

Predicted

Phenotypic Enhancement

FSW = 0.0418

Unknown

30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE
AT3G58610

Predicted

Phenotypic Enhancement

FSW = 0.0543

Unknown

KETOL-ACID REDUCTOISOMERASE
AT3G55400

Predicted

biochemical

two hybrid

Affinity Capture-Western

FSW = 0.0369

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G44610

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0910

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G56160Predicted

Phenotypic Enhancement

FSW = 0.0368

Unknown

BILE ACIDSODIUM SYMPORTER
AT1G45145

Predicted

Phenotypic Enhancement

FSW = 0.0923

Unknown

ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G71860

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE
AT2G04390

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0219

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT5G58640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1787

Unknown

SELENOPROTEIN-RELATED
AT4G04340

Predicted

Phenotypic Suppression

FSW = 0.0378

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.1143

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G37790

Predicted

Phenotypic Enhancement

FSW = 0.1123

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G17420

Predicted

two hybrid

FSW = 0.0799

Unknown

NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT4G28860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2494

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19310

Predicted

Phenotypic Enhancement

FSW = 0.0167

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT1G63780

Predicted

Phenotypic Enhancement

FSW = 0.0198

Unknown

IMP4
AT4G09800Predicted

Phenotypic Suppression

FSW = 0.0822

Unknown

RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G28650

Predicted

Phenotypic Enhancement

FSW = 0.0126

Unknown

WRKY74 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT1G72560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-Western

FSW = 0.1900

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G30160

Predicted

Phenotypic Enhancement

FSW = 0.2571

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G19980

Predicted

Phenotypic Enhancement

FSW = 0.1674

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2367

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.1725

Unknown

ARA6 GTP BINDING / GTPASE
AT4G16420

Predicted

Phenotypic Enhancement

FSW = 0.0880

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G49060

Predicted

Phenotypic Enhancement

FSW = 0.0415

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT3G10610

Predicted

Phylogenetic profile method

FSW = 0.0484

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17C)
AT2G29540

Predicted

Phenotypic Enhancement

FSW = 0.0786

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.1405

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0040

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT2G44530

Predicted

two hybrid

FSW = 0.0279

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE
AT1G13950

Predicted

synthetic growth defect

FSW = 0.0797

Unknown

ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G26320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2640

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G34580

Predicted

two hybrid

Reconstituted Complex

Reconstituted Complex

Affinity Capture-MS

Phenotypic Enhancement

Reconstituted Complex

two hybrid

FSW = 0.0822

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G35350

Predicted

Phenotypic Enhancement

FSW = 0.1035

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G43910

Predicted

Phenotypic Enhancement

FSW = 0.0619

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G68530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2989

Unknown

KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS
AT1G77780

Predicted

Reconstituted Complex

two hybrid

synthetic growth defect

FSW = 0.1503

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT2G37420

Predicted

Phenotypic Suppression

FSW = 0.2571

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G11230

Predicted

Phenotypic Enhancement

FSW = 0.1283

Unknown

YIPPEE FAMILY PROTEIN
AT3G12200

Predicted

Phenotypic Enhancement

FSW = 0.1068

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18850

Predicted

Phenotypic Suppression

FSW = 0.0689

Unknown

LPAT5 ACYLTRANSFERASE
AT3G24010

Predicted

two hybrid

FSW = 0.1279

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G24495

Predicted

Phenotypic Enhancement

FSW = 0.0171

Unknown

MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G04700

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Colocalization

FSW = 0.1602

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G10360

Predicted

Phenotypic Enhancement

FSW = 0.1074

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT4G10770

Predicted

Phenotypic Suppression

FSW = 0.0286

Unknown

OPT7 (OLIGOPEPTIDE TRANSPORTER 7) OLIGOPEPTIDE TRANSPORTER
AT4G19560

Predicted

Phenotypic Enhancement

FSW = 0.0733

Unknown

CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G19645

Predicted

Phenotypic Suppression

FSW = 0.0566

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G21480

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Colocalization

interologs mapping

FSW = 0.1408

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G29580

Predicted

Phenotypic Enhancement

FSW = 0.0985

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT1G20693

Predicted

synthetic growth defect

FSW = 0.1507

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.1469

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.1389

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G01600

Predicted

Phenotypic Enhancement

FSW = 0.0621

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G03130

Predicted

Phenotypic Enhancement

FSW = 0.1389

Unknown

RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G23820

Predicted

Phenotypic Enhancement

FSW = 0.0385

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.1632

Unknown

UNKNOWN PROTEIN
AT4G23420

Predicted

Phenotypic Enhancement

FSW = 0.0502

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G13480

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0885

Unknown

FY PROTEIN BINDING
AT5G45620

Predicted

interologs mapping

FSW = 0.2209

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G49560

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

UNKNOWN PROTEIN
AT5G06600

Predicted

Affinity Capture-MS

FSW = 0.0378

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G15240

Predicted

Phenotypic Enhancement

FSW = 0.0639

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G39500

Predicted

Phenotypic Suppression

FSW = 0.0301

Unknown

PATTERN FORMATION PROTEIN PUTATIVE
AT5G44830

Predicted

Phenotypic Enhancement

FSW = 0.2045

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G46150

Predicted

Phenotypic Enhancement

FSW = 0.0067

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G64760

Predicted

Affinity Capture-MS

FSW = 0.1256

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT2G05220

Predicted

Phylogenetic profile method

FSW = 0.0424

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17B)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454