Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04920 - ( vacuolar protein sorting 36 family protein / VPS36 family protein )
21 Proteins interacs with AT5G04920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09260 | Predictedtwo hybridtwo hybrid | FSW = 0.7485
| Unknown | VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) |
AT5G63880 | Predictedinteraction prediction | FSW = 0.3765
| Unknown | VPS201 |
AT4G36760 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | ATAPP1 N-1-NAPHTHYLPHTHALAMIC ACID BINDING / AMINOPEPTIDASE |
AT1G66070 | Predictedtwo hybridtwo hybrid | FSW = 0.1029
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT3G21060 | Predictedtwo hybridtwo hybrid | FSW = 0.0452
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G19003 | Predictedtwo hybridtwo hybridtwo hybridCo-crystal Structuretwo hybridCo-crystal Structureinteraction predictionEnriched domain pair | FSW = 0.4270
| Unknown | VPS25 |
AT5G37475 | Predictedtwo hybrid | FSW = 0.0775
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT4G27040 | Predictedinteraction predictiontwo hybridtwo hybridCo-crystal StructureAffinity Capture-MSCo-crystal Structuretwo hybridEnriched domain pairCo-expression | FSW = 0.6175
| Unknown | VPS22 |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1274
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0788
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.1739
| Unknown | NUCLEOTIDE BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1802
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.2157
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1382
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.1136
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1122
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1663
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.0880
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.1442
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.1875
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT4G05000 | Predictedtwo hybrid | FSW = 0.3086
| Unknown | VPS28-2 TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454