Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04990 - ( sad1/unc-84 protein-related )
29 Proteins interacs with AT5G04990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G10730 | Experimentalfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0333
| Class A:nucleusendoplasmic reticulumClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | SAD1/UNC-84-LIKE 2 FAMILY PROTEIN |
AT3G61420 | Predictedtwo hybrid | FSW = 0.0417
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G35530 | Predictedtwo hybridtwo hybrid | FSW = 0.0106
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT1G55750 | Predictedtwo hybrid | FSW = 0.0088
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G12840 | Predictedtwo hybrid | FSW = 0.0455
| Class C:nucleus | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT5G45130 | PredictedAffinity Capture-MS | FSW = 0.0056
| Class C:endoplasmic reticulum | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT1G78900 | Predictedtwo hybridtwo hybrid | FSW = 0.0077
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G11150 | Predictedtwo hybridtwo hybrid | FSW = 0.0217
| Unknown | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G58470 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT3G22230 | Predictedtwo hybrid | FSW = 0.1569
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27B) |
AT2G35690 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0483
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT5G59720 | Predictedtwo hybrid | FSW = 0.0496
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT1G48360 | Predictedtwo hybrid | FSW = 0.0833
| Unknown | HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G55830 | Predictedtwo hybridtwo hybrid | FSW = 0.0417
| Unknown | UNKNOWN PROTEIN |
AT3G27060 | Predictedtwo hybridtwo hybrid | FSW = 0.0167
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT4G28760 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | UNKNOWN PROTEIN |
AT4G31400 | Predictedtwo hybridtwo hybrid | FSW = 0.0714
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT2G26430 | Predictedtwo hybridtwo hybrid | FSW = 0.1000
| Unknown | RCY1 (ARGININE-RICH CYCLIN 1) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G07790 | Predictedtwo hybridtwo hybrid | FSW = 0.0167
| Unknown | DGCR14-RELATED |
AT5G04460 | Predictedtwo hybrid | FSW = 0.0833
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G07060 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT5G36160 | Predictedtwo hybrid | FSW = 0.0574
| Unknown | AMINOTRANSFERASE-RELATED |
AT5G56740 | Predictedtwo hybridtwo hybrid | FSW = 0.0109
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G49860 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | ATGSTF14 GLUTATHIONE TRANSFERASE |
AT5G53970 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | AMINOTRANSFERASE PUTATIVE |
AT1G07360 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G24010 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454