Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G05420 - ( immunophilin putative / FKBP-type peptidyl-prolyl cis-trans isomerase putative )
22 Proteins interacs with AT5G05420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G23190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0160
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT3G26590 | Predictedbiochemical | FSW = 0.0398
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0111
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0193
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0470
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G21700 | Predictedsynthetic growth defect | FSW = 0.0259
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0414
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G60980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0585
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G52300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0392
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT3G59790 | PredictedAffinity Capture-MS | FSW = 0.0842
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT1G13580 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0120
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.0350
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.0388
| Unknown | UNKNOWN PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0282
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G64350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0711
| Unknown | FKBP12 (FK506-BINDING PROTEIN) FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454