Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05620 - ( GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP binding / GTPase/ structural molecule )
32 Proteins interacs with AT5G05620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G62700 | ExperimentalCo-purification | FSW = 0.3266
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G61650 | PredictedShared biological functionEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.3827
| Class C:mitochondrioncytoskeleton | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT4G14960 | PredictedAffinity Capture-MSin vitro | FSW = 0.0886
| Class C:cytoskeleton | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G06680 | Predictedin vivoAffinity Capture-MSReconstituted Complex | FSW = 0.0961
| Class C:cytoskeleton | SPC98 (SPINDLE POLE BODY COMPONENT 98) TUBULIN BINDING |
AT5G12250 | PredictedShared biological functionEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2130
| Class C:cytoskeleton | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20010 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1594
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G20890 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4582
| Unknown | TUB9 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT2G29550 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4482
| Unknown | TUB7 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G75780 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.4400
| Unknown | TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G62690 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3556
| Unknown | TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT1G76490 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT5G10450 | Predictedtwo hybrid | FSW = 0.0041
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G80070 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT5G23860 | Predictedtwo hybridEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.4783
| Unknown | TUB8 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G44340 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4783
| Unknown | TUB4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G00100 | Predictedtwo hybrid | FSW = 0.0043
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G59840 | PredictedAffinity Capture-Western | FSW = 0.0227
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT5G54280 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR |
AT1G32210 | Predictedtwo hybrid | FSW = 0.0625
| Unknown | ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) |
AT2G35520 | Predictedtwo hybrid | FSW = 0.1429
| Unknown | DAD2 (DEFENDER AGAINST CELL DEATH 2) |
AT2G17370 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT4G24040 | Predictedtwo hybrid | FSW = 0.0091
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G38780 | Predictedtwo hybrid | FSW = 0.0909
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G20570 | Predictedco-fractionationCo-fractionation | FSW = 0.1143
| Unknown | TUBULIN FAMILY PROTEIN |
AT4G27180 | PredictedPhenotypic EnhancementPhenotypic EnhancementEnriched domain pair | FSW = 0.0710
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G09150 | Predictedtwo hybridtwo hybrid | FSW = 0.1153
| Unknown | T-COMPLEX PROTEIN 11 |
AT4G12870 | Predictedtwo hybridtwo hybrid | FSW = 0.1250
| Unknown | GAMMA INTERFERON RESPONSIVE LYSOSOMAL THIOL REDUCTASE FAMILY PROTEIN / GILT FAMILY PROTEIN |
AT5G01580 | Predictedtwo hybrid | FSW = 0.0625
| Unknown | OSH1 (OAS HIGH ACCUMULATION 1) CATALYTIC |
AT5G17410 | PredictedReconstituted Complex | FSW = 0.0969
| Unknown | TUBULIN FAMILY PROTEIN |
AT5G54670 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G32910 | Predictedin vivoAffinity Capture-MS | FSW = 0.0327
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT4G27370 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | VIIIB MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454