Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05670 - ( signal recognition particle binding )

20 Proteins interacs with AT5G05670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G55360

Predicted

two hybrid

FSW = 0.0712

Class C:

plasma membrane

endoplasmic reticulum

CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT1G76490

Predicted

two hybrid

FSW = 0.0985

Class C:

endoplasmic reticulum

HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT5G66020

Predicted

two hybrid

FSW = 0.0675

Class C:

endoplasmic reticulum

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT4G30600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.1154

Class C:

endoplasmic reticulum

SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT FAMILY PROTEIN
AT3G02090

Predicted

Affinity Capture-MS

FSW = 0.0183

Unknown

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0144

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74560

Predicted

interologs mapping

synthetic growth defect

Synthetic Lethality

FSW = 0.0458

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT3G14420

Predicted

interologs mapping

FSW = 0.0674

Unknown

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT1G16880

Predicted

two hybrid

FSW = 0.0577

Unknown

URIDYLYLTRANSFERASE-RELATED
AT1G07420

Predicted

two hybrid

FSW = 0.1077

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT3G08730

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Suppression

interologs mapping

FSW = 0.0636

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G55060

Predicted

interologs mapping

FSW = 0.0457

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT2G38490

Predicted

interologs mapping

FSW = 0.0533

Unknown

CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G08750

Predicted

two hybrid

FSW = 0.1338

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT1G69640

Predicted

two hybrid

FSW = 0.1441

Unknown

SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT1G78720

Predicted

two hybrid

FSW = 0.0883

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G34980

Predicted

two hybrid

FSW = 0.0658

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT4G39830

Predicted

two hybrid

FSW = 0.0674

Unknown

L-ASCORBATE OXIDASE PUTATIVE
AT5G14850

Predicted

interologs mapping

FSW = 0.1164

Unknown

MANNOSYLTRANSFERASE PUTATIVE
AT2G18770

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5602

Unknown

SIGNAL RECOGNITION PARTICLE BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454