Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05670 - ( signal recognition particle binding )
20 Proteins interacs with AT5G05670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G55360 | Predictedtwo hybrid | FSW = 0.0712
| Class C:plasma membraneendoplasmic reticulum | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G76490 | Predictedtwo hybrid | FSW = 0.0985
| Class C:endoplasmic reticulum | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT5G66020 | Predictedtwo hybrid | FSW = 0.0675
| Class C:endoplasmic reticulum | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT4G30600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.1154
| Class C:endoplasmic reticulum | SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT FAMILY PROTEIN |
AT3G02090 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | Predictedinterologs mappingsynthetic growth defectSynthetic Lethality | FSW = 0.0458
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G14420 | Predictedinterologs mapping | FSW = 0.0674
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT1G16880 | Predictedtwo hybrid | FSW = 0.0577
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT1G07420 | Predictedtwo hybrid | FSW = 0.1077
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT3G08730 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Suppressioninterologs mapping | FSW = 0.0636
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G55060 | Predictedinterologs mapping | FSW = 0.0457
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT2G38490 | Predictedinterologs mapping | FSW = 0.0533
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G08750 | Predictedtwo hybrid | FSW = 0.1338
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G69640 | Predictedtwo hybrid | FSW = 0.1441
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G78720 | Predictedtwo hybrid | FSW = 0.0883
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G34980 | Predictedtwo hybrid | FSW = 0.0658
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT4G39830 | Predictedtwo hybrid | FSW = 0.0674
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G14850 | Predictedinterologs mapping | FSW = 0.1164
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT2G18770 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5602
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454