Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05920 - ( DHS (DEOXYHYPUSINE SYNTHASE) )

9 Proteins interacs with AT5G05920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G33120Predicted

two hybrid

FSW = 0.1696

Unknown

60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT4G10450

Predicted

two hybrid

FSW = 0.1015

Unknown

60S RIBOSOMAL PROTEIN L9 (RPL90D)
AT1G26630

Predicted

two hybrid

two hybrid

in vitro

Affinity Capture-MS

FSW = 0.1498

Unknown

FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR
AT4G11380

Predicted

interaction prediction

two hybrid

FSW = 0.1036

Unknown

BETA-ADAPTIN PUTATIVE
AT3G06720

Predicted

interaction prediction

FSW = 0.0288

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT4G11330

Predicted

two hybrid

FSW = 0.0110

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT1G13950

Predicted

in vitro

Affinity Capture-MS

two hybrid

FSW = 0.0623

Unknown

ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G69410

Predicted

in vitro

Affinity Capture-MS

in vitro

FSW = 0.3037

Unknown

ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) TRANSLATION INITIATION FACTOR
AT1G02690

Predicted

two hybrid

Co-expression

FSW = 0.0378

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454