Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06420 - ( zinc finger (CCCH-type/C3HC4-type RING finger) family protein )
77 Proteins interacs with AT5G06420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.2556
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.4024
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3341
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.2268
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5158
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.4788
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.4088
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4520
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.1116
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT4G14970 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | UNKNOWN PROTEIN |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3895
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.2767
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0895
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3457
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.4004
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G14120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1089
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.4630
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0879
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G27450 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G55690 | PredictedAffinity Capture-MS | FSW = 0.1764
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.5489
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3703
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G17310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0783
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.3018
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.4610
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.5035
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.2088
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.3971
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.2363
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.4470
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G35640 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1241
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2190
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G23890 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3077
| Unknown | PSF2 |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0655
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G80460 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G26260 | Predictedtwo hybrid | FSW = 0.0182
| Unknown | AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING) |
AT3G10520 | Predictedtwo hybrid | FSW = 0.0500
| Unknown | AHB2 (ARABIDOPSIS HAEMOGLOBIN 2) OXYGEN TRANSPORTER |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3469
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.1047
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G16740 | Predictedtwo hybridAffinity Capture-MSSynthetic Lethalitytwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4321
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.3093
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.4184
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2693
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | UNKNOWN PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0906
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G43910 | Predictedinterologs mapping | FSW = 0.0065
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.1372
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.1164
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.1008
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.4109
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.4845
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G44065 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2271
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1875
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G17520 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2928
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2040
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1121
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G59790 | PredictedAffinity Capture-MS | FSW = 0.0601
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G36070 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.4786
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.3094
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.4334
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.1188
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4432
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.2519
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.3507
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4776
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454