Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06550 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN cell surface receptor linked signal transduction EXPRESSED IN 19 plant structures EXPRESSED DURING 12 growth stages CONTAINS InterPro DOMAIN/s Cyclin-like F-box (InterProIPR001810) Transcription factor jumonji/aspartyl beta-hydroxylase (InterProIPR003347) Transcription factor jumonji (InterProIPR013129) BEST Arabidopsis thaliana protein match is transferase transferring glycosyl groups (TAIRAT1G782801) Has 1299 Blast hits to 1289 proteins in 204 species Archae - 0 Bacteria - 195 Metazoa - 777 Fungi - 106 Plants - 94 Viruses - 0 Other Eukaryotes - 127 (source NCBI BLink) )

9 Proteins interacs with AT5G06550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0184

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT5G18170

Predicted

two hybrid

two hybrid

FSW = 0.0556

Unknown

GDH1 (GLUTAMATE DEHYDROGENASE 1) ATP BINDING / GLUTAMATE DEHYDROGENASE [NAD(P)+]/ OXIDOREDUCTASE
AT4G33650

Predicted

two hybrid

FSW = 0.0364

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT2G14120

Predicted

two hybrid

two hybrid

FSW = 0.0424

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT1G02970

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0606

Unknown

WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE
AT2G12550

Predicted

two hybrid

FSW = 0.0462

Unknown

UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN
AT2G44530

Predicted

two hybrid

FSW = 0.0803

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE
AT4G20325

Predicted

two hybrid

FSW = 0.0262

Unknown

UNKNOWN PROTEIN
AT2G35390

Predicted

two hybrid

FSW = 0.0227

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454