Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G06600 - ( UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) ubiquitin thiolesterase/ ubiquitin-specific protease )
67 Proteins interacs with AT5G06600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G20000 | Predictedinterologs mapping | FSW = 0.0671
| Unknown | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
AT3G09200 | Predictedinterologs mapping | FSW = 0.0138
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G62870 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0328
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0253
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G74030 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0211
| Unknown | ENOLASE PUTATIVE |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | DNA HELICASE PUTATIVE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G22170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0749
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.0466
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0383
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G02780 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.0408
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1388
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT2G32670 | PredictedAffinity Capture-MS | FSW = 0.1417
| Unknown | ATVAMP725 |
AT4G14350 | Predictedinteraction prediction | FSW = 0.0193
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G47100 | Predictedtwo hybrid | FSW = 0.0280
| Unknown | CBL9 CALCIUM ION BINDING |
AT5G43900 | Predictedinteraction prediction | FSW = 0.0096
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0282
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G56990 | Predictedinteraction prediction | FSW = 0.0124
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0614
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.0619
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT5G27720 | Predictedinteraction prediction | FSW = 0.0107
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G39160 | Predictedbiochemical | FSW = 0.0198
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1063
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G60980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1527
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0655
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G08335 | PredictedAffinity Capture-MS | FSW = 0.0414
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT3G60360 | PredictedAffinity Capture-MS | FSW = 0.1545
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT3G25840 | Predictedinterologs mapping | FSW = 0.0208
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G04660 | Predictedtwo hybrid | FSW = 0.0397
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT1G34770 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT1G10280 | Predictedbiochemical | FSW = 0.0936
| Unknown | UNKNOWN PROTEIN |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.0351
| Unknown | UNKNOWN PROTEIN |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0502
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G29970 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic SuppressionAffinity Capture-MS | FSW = 0.1292
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementCo-purificationSynthetic Lethalitysynthetic growth defect | FSW = 0.1787
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic Suppression | FSW = 0.0628
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G13210 | PredictedbiochemicalReconstituted Complex | FSW = 0.0947
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G50780 | PredictedPhenotypic Suppression | FSW = 0.0474
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.0675
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04700 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0662
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.3025
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.0506
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT1G25155 | PredictedAffinity Capture-MS | FSW = 0.0598
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G55300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1181
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G36060 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G36260 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
AT3G06483 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0839
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT5G04800 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0866
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G14180 | PredictedPhenotypic Suppression | FSW = 0.1172
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G43710 | Predictedinteraction prediction | FSW = 0.0220
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT5G35980 | Predictedinteraction prediction | FSW = 0.0124
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G11920 | Predictedinteraction prediction | FSW = 0.0148
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT2G32600 | Predictedinteraction prediction | FSW = 0.0143
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G59760 | Predictedinteraction prediction | FSW = 0.0115
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G54960 | Predictedinteraction prediction | FSW = 0.0152
| Unknown | ANP2 MAP KINASE KINASE KINASE/ KINASE |
AT3G11910 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1135
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454