Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06620 - ( SDG38 (SET DOMAIN PROTEIN 38) )

18 Proteins interacs with AT5G06620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1786

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G15850

Predicted

Affinity Capture-MS

FSW = 0.3092

Unknown

FAD5 (FATTY ACID DESATURASE 5) 160 MONOGALACTOSYLDIACYLGLYCEROL DESATURASE/ OXIDOREDUCTASE
AT4G38200Predicted

Affinity Capture-MS

FSW = 0.6270

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G30950

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5022

Unknown

FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0080

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0623

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT2G47620

Predicted

Affinity Capture-MS

FSW = 0.1705

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT4G28060

Predicted

Affinity Capture-MS

FSW = 0.6453

Unknown

CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0718

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT4G32840

Predicted

Affinity Capture-MS

FSW = 0.3278

Unknown

PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE
AT1G08780

Predicted

Synthetic Lethality

FSW = 0.0414

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Synthetic Lethality

FSW = 0.0174

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT3G27110

Predicted

Affinity Capture-MS

FSW = 0.1068

Unknown

PEPTIDASE M48 FAMILY PROTEIN
AT4G22756

Predicted

Affinity Capture-MS

FSW = 0.2313

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G24410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2815

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G49510

Predicted

Synthetic Lethality

FSW = 0.0200

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G61770

Predicted

Phenotypic Enhancement

FSW = 0.0335

Unknown

PPAN (PETER PAN-LIKE PROTEIN)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454