Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06680 - ( SPC98 (SPINDLE POLE BODY COMPONENT 98) tubulin binding )
13 Proteins interacs with AT5G06680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G04390 | PredictedSynthetic Lethality | FSW = 0.0200
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT3G61650 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridSynthetic Lethalityinterologs mappinginterologs mappinginterologs mappingCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSin vivo | FSW = 0.1800
| Class C:plasma membranecytoskeleton | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G48040 | PredictedAffinity Capture-MS | FSW = 0.0476
| Class C:plasma membrane | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
AT3G13940 | PredictedSynthetic LethalityCo-expression | FSW = 0.0145
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G32060 | Predictedtwo hybrid | FSW = 0.1111
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S12 (RPS12C) |
AT5G05620 | Predictedin vivoAffinity Capture-MSReconstituted Complex | FSW = 0.0961
| Class C:cytoskeleton | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G25980 | PredictedAffinity Capture-Western | FSW = 0.0353
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G17410 | Predictedtwo hybridtwo hybridReconstituted Complexinterologs mappingCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mappingtwo hybridAffinity Capture-MSReconstituted ComplexColocalizationinteraction prediction | FSW = 0.3407
| Unknown | TUBULIN FAMILY PROTEIN |
AT3G22590 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0138
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0327
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0184
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0161
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454