Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G07090 - ( 40S ribosomal protein S4 (RPS4B) )
54 Proteins interacs with AT5G07090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0042
| Class A:vacuoleClass B:plasma membraneperoxisomenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G67500 | Predictedinterologs mapping | FSW = 0.0555
| Class C:vacuole | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT2G17360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0555
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0867
| Class C:vacuole | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.1072
| Class C:vacuole | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G72730 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0093
| Class C:vacuole | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G09440 | PredictedPhenotypic Suppression | FSW = 0.0492
| Class C:vacuole | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0026
| Class C:vacuole | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G14320 | PredictedAffinity Capture-Western | FSW = 0.0817
| Class C:vacuole | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.1296
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G23940 | PredictedReconstituted Complexsynthetic growth defect | FSW = 0.0527
| Unknown | DEHYDRATASE FAMILY |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.1069
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.1292
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G25400 | PredictedPhenotypic Enhancement | FSW = 0.0675
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G10070 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybridCo-purificationinterologs mapping | FSW = 0.1622
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G50000 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | CKA2 (CASEIN KINASE II ALPHA CHAIN 2) KINASE |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0575
| Unknown | ATVAMP725 |
AT5G58420 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0093
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0256
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.1758
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G64880 | PredictedPhenotypic Enhancement | FSW = 0.0596
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0868
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G50110 | PredictedSynthetic Rescue | FSW = 0.0329
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
AT1G52300 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0691
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G10210 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1243
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G72340 | PredictedAffinity Capture-Western | FSW = 0.0767
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT2G19750 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30A) |
AT2G41340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1578
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G43190 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G46070 | PredictedReconstituted Complex | FSW = 0.0833
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G24495 | Predictedtwo hybridtwo hybrid | FSW = 0.0843
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1258
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G14320 | PredictedAffinity Capture-Western | FSW = 0.0753
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT4G25950 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemical | FSW = 0.1088
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0492
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G47830 | PredictedPhenotypic Enhancement | FSW = 0.0682
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.1471
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55060 | PredictedAffinity Capture-Western | FSW = 0.1164
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55730 | Predictedtwo hybrid | FSW = 0.0036
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0994
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.1181
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G18660 | PredictedPhenotypic Enhancement | FSW = 0.1044
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.0741
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1317
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G10360 | PredictedPhenotypic Enhancement | FSW = 0.0883
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.1046
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G23895 | PredictedPhenotypic Enhancement | FSW = 0.0656
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.1762
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1557
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454