Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G07590 - ( WD-40 repeat protein family )
27 Proteins interacs with AT5G07590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G53230 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G50480 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G62740 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G10130 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT5G42970 | PredictedAffinity Capture-MS | FSW = 0.0985
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT3G61140 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | FUS6 (FUSCA 6) |
AT5G03340 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT5G14250 | PredictedAffinity Capture-MS | FSW = 0.1045
| Unknown | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT2G26990 | PredictedAffinity Capture-MS | FSW = 0.1377
| Unknown | FUS12 (FUSCA 12) |
AT1G09900 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G29990 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G72310 | PredictedAffinity Capture-MS | FSW = 0.1067
| Unknown | ATL3 PROTEIN BINDING / ZINC ION BINDING |
AT2G07340 | PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G04240 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G17660 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G22480 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G54180 | PredictedAffinity Capture-MS | FSW = 0.0253
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G12400 | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G28470 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
AT4G33945 | PredictedAffinity Capture-MS | FSW = 0.0762
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G39710 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | EMB2745 (EMBRYO DEFECTIVE 2745) |
AT5G42220 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G46280 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G54310 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | AGD5 (ARF-GAP DOMAIN 5) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G63220 | PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | UNKNOWN PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454