Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08080 - ( SYP132 (SYNTAXIN OF PLANTS 132) SNAP receptor )

23 Proteins interacs with AT5G08080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

interologs mapping

interaction prediction

Enriched domain pair

FSW = 0.0781

Class C:

plasma membrane

 SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT4G38510

Predicted

Reconstituted Complex

FSW = 0.0237

Class C:

plasma membrane

 VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE
AT1G09070

Predicted

two hybrid

FSW = 0.1026

Class C:

plasma membrane

 SRC2 (SOYBEAN GENE REGULATED BY COLD-2) PROTEIN BINDING
AT3G56190

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

in vitro

FSW = 0.0980

Class C:

plasma membrane

 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT5G10450

Predicted

two hybrid

FSW = 0.0119

Class C:

plasma membrane

 GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G61210

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

in vitro

in vitro

in vivo

in vitro

in vitro

two hybrid

two hybrid

in vitro

in vivo

in vitro

in vivo

two hybrid

Reconstituted Complex

FSW = 0.2180

Class C:

plasma membrane

 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING
AT4G15780

Predicted

two hybrid

in vitro

in vivo

in vivo

in vivo

in vitro

in vitro

in vitro

in vitro

two hybrid

two hybrid

two hybrid

in vivo

in vivo

in vivo

in vitro

two hybrid

in vitro

two hybrid

Affinity Capture-Western

FSW = 0.2759

Class C:

plasma membrane

 ATVAMP724
AT5G54110

Predicted

Reconstituted Complex

FSW = 0.0750

Class C:

plasma membrane

 ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) STRUCTURAL MOLECULE
AT4G12120

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1214

Class C:

plasma membrane

 SEC1B PROTEIN TRANSPORTER
AT5G47180

Predicted

Reconstituted Complex

FSW = 0.0368

Class C:

plasma membrane

 VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN
AT5G50440

Predicted

two hybrid

FSW = 0.0704

Unknown

 MEMB12 (MEMBRIN 12) SNAP RECEPTOR
AT5G45130

Predicted

Affinity Capture-MS

in vivo

in vitro

FSW = 0.0147

Unknown

 RHA1 (RAB HOMOLOG 1) GTP BINDING
AT4G04910

Predicted

Phenotypic Enhancement

in vivo

Phenotypic Enhancement

in vivo

in vitro

FSW = 0.0790

Unknown

 NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G03560

Predicted

in vivo

FSW = 0.1633

Unknown

 ATTPC1 (TWO-PORE CHANNEL 1) CALCIUM CHANNEL/ VOLTAGE-GATED CALCIUM CHANNEL
AT5G11150

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.2432

Unknown

 ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT1G79590

Predicted

in vitro

FSW = 0.0960

Unknown

 SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT2G26940

Predicted

two hybrid

FSW = 0.0342

Unknown

 ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G44950

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0049

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G18370

Predicted

in vitro

in vitro

FSW = 0.1203

Unknown

 ATSYTF
AT5G50170

Predicted

in vivo

two hybrid

FSW = 0.0306

Unknown

 C2 DOMAIN-CONTAINING PROTEIN / GRAM DOMAIN-CONTAINING PROTEIN
AT5G50840

Predicted

Reconstituted Complex

in vitro

FSW = 0.0298

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS LINC2 (LITTLE NUCLEI2) (TAIRAT1G132202) HAS 50047 BLAST HITS TO 27335 PROTEINS IN 1173 SPECIES ARCHAE - 429 BACTERIA - 3521 METAZOA - 26018 FUNGI - 2663 PLANTS - 1200 VIRUSES - 162 OTHER EUKARYOTES - 16054 (SOURCE NCBI BLINK)
AT5G46025

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0345

Unknown

 RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G35450

Predicted

Gene fusion method

FSW = 0.0171

Unknown

 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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