Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08160 - ( ATPK3 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
25 Proteins interacs with AT5G08160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G14320 | Predictedinterologs mapping | FSW = 0.0104
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G13450 | PredictedPhenotypic Enhancement | FSW = 0.0200
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G58610 | PredictedSynthetic Lethality | FSW = 0.1142
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT3G04790 | Predictedtwo hybrid | FSW = 0.1379
| Unknown | RIBOSE 5-PHOSPHATE ISOMERASE-RELATED |
AT2G43030 | PredictedSynthetic Lethality | FSW = 0.0225
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT4G34460 | PredictedGene fusion method | FSW = 0.0163
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G45780 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G10450 | PredictedSynthetic Lethality | FSW = 0.0301
| Unknown | 60S RIBOSOMAL PROTEIN L9 (RPL90D) |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.0371
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0424
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G13445 | PredictedSynthetic Lethality | FSW = 0.0021
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G49060 | PredictedSynthetic Lethality | FSW = 0.0229
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G30540 | Predictedtwo hybridin vivoin vitro | FSW = 0.0952
| Unknown | ATPASE BADF/BADG/BCRA/BCRD-TYPE FAMILY |
AT5G04500 | PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 47 |
AT1G47830 | PredictedPhenotypic Enhancement | FSW = 0.0491
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT3G52890 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | KIPK (KCBP-INTERACTING PROTEIN KINASE) KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G11500 | PredictedSynthetic Lethality | FSW = 0.1216
| Unknown | UNKNOWN PROTEIN |
AT5G14850 | PredictedSynthetic Lethality | FSW = 0.0286
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT5G15400 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT5G17860 | PredictedSynthetic Lethality | FSW = 0.0570
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G55910 | PredictedSynthetic Lethality | FSW = 0.0334
| Unknown | D6PK (D6 PROTEIN KINASE) KINASE/ PROTEIN KINASE |
AT2G01290 | Predictedtwo hybrid | FSW = 0.0955
| Unknown | RIBOSE-5-PHOSPHATE ISOMERASE |
AT2G41930 | PredictedGene fusion methodCo-expression | FSW = 0.0627
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G40580 | PredictedGene fusion methodCo-expression | FSW = 0.0290
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G38620 | PredictedGene fusion method | FSW = 0.0143
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454