Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08335 - ( ATSTE14B protein-S-isoprenylcysteine O-methyltransferase )
40 Proteins interacs with AT5G08335Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23320 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0372
| Class C:endoplasmic reticulum | ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) CARBOXYL-O-METHYLTRANSFERASE/ PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT2G38960 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Class C:endoplasmic reticulum | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT5G19550 | PredictedPhenotypic Enhancement | FSW = 0.0250
| Unknown | ASP2 (ASPARTATE AMINOTRANSFERASE 2) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0528
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G77750 | PredictedPhenotypic Enhancement | FSW = 0.0481
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0263
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.1023
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G35020 | Predictedin vivo | FSW = 0.0105
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT4G24630 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | RECEPTOR/ ZINC ION BINDING |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G25070 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT5G39950 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | ATTRX2 (THIOREDOXIN 2) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G17790 | Predictedinteraction prediction | FSW = 0.0190
| Unknown | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0215
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G10330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0816
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G11510 | PredictedAffinity Capture-MS | FSW = 0.0393
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G11755 | PredictedAffinity Capture-MS | FSW = 0.0677
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G44180 | PredictedPhenotypic Enhancement | FSW = 0.0340
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G60680 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0522
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G31260 | PredictedAffinity Capture-MS | FSW = 0.0434
| Unknown | APG9 (AUTOPHAGY 9) |
AT3G03180 | PredictedAffinity Capture-MS | FSW = 0.0341
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT3G03900 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | ADENYLYLSULFATE KINASE PUTATIVE |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0341
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G06600 | PredictedAffinity Capture-MS | FSW = 0.0414
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0222
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0453
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.0222
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G39500 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defect | FSW = 0.1135
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0089
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0617
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G40990 | Predictedinterologs mapping | FSW = 0.0465
| Unknown | ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454