Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08380 - ( AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1) alpha-galactosidase/ catalytic/ hydrolase hydrolyzing O-glycosyl compounds )
26 Proteins interacs with AT5G08380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G08370 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0580
| Class C:extracellular | ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G39410 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | BINDING / CATALYTIC |
AT3G56310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4004
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G02570 | Predictedtwo hybrid | FSW = 0.0215
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT3G24010 | Predictedtwo hybrid | FSW = 0.0043
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT1G26830 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G27880 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | ATP-DEPENDENT DNA HELICASE PUTATIVE |
AT1G53710 | Predictedtwo hybrid | FSW = 0.0666
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G77720 | Predictedtwo hybrid | FSW = 0.0516
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G80460 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G01120 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0450
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12980 | Predictedtwo hybrid | FSW = 0.0300
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G19420 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT3G53930 | Predictedtwo hybrid | FSW = 0.0613
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G54180 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G25550 | Predictedtwo hybrid | FSW = 0.0794
| Unknown | PROTEIN BINDING |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT5G11300 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G27620 | Predictedtwo hybrid | FSW = 0.0446
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45190 | Predictedtwo hybrid | FSW = 0.2110
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G55760 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G60570 | Predictedtwo hybrid | FSW = 0.0307
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT5G63670 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454