Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08560 - ( transducin family protein / WD-40 repeat family protein )
15 Proteins interacs with AT5G08560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G17970 | PredictedGene fusion method | FSW = 0.1390
| Unknown | ATTOC64-III (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-III) BINDING / CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR |
AT1G18150 | PredictedGene fusion method | FSW = 0.1341
| Unknown | ATMPK8 MAP KINASE |
AT5G23400 | PredictedGene fusion method | FSW = 0.6087
| Unknown | DISEASE RESISTANCE FAMILY PROTEIN / LRR FAMILY PROTEIN |
AT1G61150 | Predictedtwo hybridtwo hybrid | FSW = 0.2462
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G111101) HAS 740 BLAST HITS TO 708 PROTEINS IN 137 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 401 FUNGI - 144 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 56 (SOURCE NCBI BLINK) |
AT4G09300 | Predictedtwo hybrid | FSW = 0.2909
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN FLOWER EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G611506) HAS 369 BLAST HITS TO 369 PROTEINS IN 108 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 175 FUNGI - 55 PLANTS - 90 VIRUSES - 0 OTHER EUKARYOTES - 47 (SOURCE NCBI BLINK) |
AT5G19000 | Predictedtwo hybrid | FSW = 0.0592
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT2G22690 | PredictedAffinity Capture-MS | FSW = 0.1600
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G40110 | PredictedAffinity Capture-MS | FSW = 0.1524
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G55070 | PredictedAffinity Capture-MS | FSW = 0.3117
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
AT2G39760 | Predictedtwo hybrid | FSW = 0.0902
| Unknown | BPM3 PROTEIN BINDING |
AT5G43920 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1111
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G52860 | PredictedGene fusion method | FSW = 0.4000
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT2G35620 | PredictedGene fusion method | FSW = 0.1341
| Unknown | FEI2 (FEI 2) KINASE |
AT2G32660 | PredictedGene fusion method | FSW = 0.3480
| Unknown | ATRLP22 (RECEPTOR LIKE PROTEIN 22) KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454