Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08565 - ( positive transcription elongation factor/ zinc ion binding )
42 Proteins interacs with AT5G08565Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | Predictedinterologs mapping | FSW = 0.1042
| Unknown | HISTONE H4 |
AT3G56310 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT4G35800 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.2422
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G26720 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G12810 | PredictedSynthetic Lethality | FSW = 0.0689
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G16980 | PredictedAffinity Capture-MS | FSW = 0.2091
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G44530 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.1454
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18040 | Predictedsynthetic growth defect | FSW = 0.0652
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT5G09920 | PredictedAffinity Capture-MS | FSW = 0.2685
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.2217
| Unknown | GTC2 |
AT5G09860 | PredictedSynthetic Lethality | FSW = 0.1829
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT1G63210 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.4194
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT2G34210 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridSynthetic Lethality | FSW = 0.3620
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G55520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0528
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G38560 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.3132
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G18760 | PredictedSynthetic Rescue | FSW = 0.0660
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G59180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2241
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT4G21710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1966
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G15400 | PredictedAffinity Capture-MS | FSW = 0.2278
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G05210 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT1G32130 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.1069
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G04630 | PredictedAffinity Capture-MS | FSW = 0.1935
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G22320 | PredictedAffinity Capture-MS | FSW = 0.1588
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G06670 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0735
| Unknown | BINDING |
AT1G09200 | Predictedinterologs mapping | FSW = 0.1587
| Unknown | HISTONE H3 |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0223
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT5G10270 | Predictedsynthetic growth defect | FSW = 0.1887
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G63610 | Predictedsynthetic growth defect | FSW = 0.0670
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G20320 | Predictedsynthetic growth defect | FSW = 0.1568
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G46030 | PredictedSynthetic Lethality | FSW = 0.1480
| Unknown | UNKNOWN PROTEIN |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.0909
| Unknown | SGA2 |
AT3G09100 | PredictedSynthetic Lethality | FSW = 0.1120
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.0644
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G21060 | PredictedSynthetic Lethality | FSW = 0.0725
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G79730 | PredictedSynthetic Lethality | FSW = 0.1928
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT1G61040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2625
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G55255 | PredictedSynthetic Lethality | FSW = 0.0465
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0694
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G63670 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4214
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454