Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08565 - ( positive transcription elongation factor/ zinc ion binding )

42 Proteins interacs with AT5G08565
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07660Predicted

interologs mapping

FSW = 0.1042

Unknown

HISTONE H4
AT3G56310

Predicted

two hybrid

FSW = 0.0187

Unknown

ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE
AT4G35800

Predicted

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.2422

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G26720

Predicted

Affinity Capture-MS

FSW = 0.0452

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G12810

Predicted

Synthetic Lethality

FSW = 0.0689

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980

Predicted

Affinity Capture-MS

FSW = 0.2091

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G44530

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1454

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G18040

Predicted

synthetic growth defect

FSW = 0.0652

Unknown

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT5G09920

Predicted

Affinity Capture-MS

FSW = 0.2685

Unknown

NRPB4 DNA-DIRECTED RNA POLYMERASE
AT4G10670

Predicted

Affinity Capture-MS

FSW = 0.2217

Unknown

GTC2
AT5G09860

Predicted

Synthetic Lethality

FSW = 0.1829

Unknown

NUCLEAR MATRIX PROTEIN-RELATED
AT1G63210

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.4194

Unknown

RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT2G34210

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Synthetic Lethality

FSW = 0.3620

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G55520

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0528

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G38560

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

FSW = 0.3132

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G18760

Predicted

Synthetic Rescue

FSW = 0.0660

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G59180

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2241

Unknown

NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.1219

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1966

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G15400

Predicted

Affinity Capture-MS

FSW = 0.2278

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G05210

Predicted

two hybrid

two hybrid

FSW = 0.0212

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.0483

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT1G32130

Predicted

Affinity Capture-MS

FSW = 0.1947

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.1069

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G04630

Predicted

Affinity Capture-MS

FSW = 0.1935

Unknown

NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G22320

Predicted

Affinity Capture-MS

FSW = 0.1588

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G06670

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.0735

Unknown

BINDING
AT1G09200Predicted

interologs mapping

FSW = 0.1587

Unknown

HISTONE H3
AT2G23420

Predicted

synthetic growth defect

FSW = 0.0223

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT5G10270

Predicted

synthetic growth defect

FSW = 0.1887

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G63610

Predicted

synthetic growth defect

FSW = 0.0670

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G20320

Predicted

synthetic growth defect

FSW = 0.1568

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT5G46030

Predicted

Synthetic Lethality

FSW = 0.1480

Unknown

UNKNOWN PROTEIN
AT1G66740

Predicted

Synthetic Lethality

FSW = 0.0909

Unknown

SGA2
AT3G09100

Predicted

Synthetic Lethality

FSW = 0.1120

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.0644

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060

Predicted

Synthetic Lethality

FSW = 0.0725

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G79730

Predicted

Synthetic Lethality

FSW = 0.1928

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G61040

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2625

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G55255Predicted

Synthetic Lethality

FSW = 0.0465

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.0694

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT5G63670

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4214

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454