Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08570 - ( pyruvate kinase putative )
35 Proteins interacs with AT5G08570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25960 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5306
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT5G56350 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3096
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G04050 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2991
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT4G26390 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4599
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G55810 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2190
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G55650 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.5306
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G52990 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4927
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2208
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT2G36580 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5110
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G04920 | Predictedtwo hybrid | FSW = 0.0126
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT1G07810 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Class C:plasma membrane | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT2G01630 | PredictedPhenotypic Enhancement | FSW = 0.0762
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT5G58800 | PredictedAffinity Capture-MS | FSW = 0.0432
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0234
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0236
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G22960 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5110
| Unknown | PKP-ALPHA PYRUVATE KINASE |
AT5G52920 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5306
| Unknown | PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) PYRUVATE KINASE |
AT1G32440 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5306
| Unknown | PKP3 (PLASTIDIAL PYRUVATE KINASE 3) PYRUVATE KINASE |
AT5G19310 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT1G17560 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | HLL (HUELLENLOS) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT1G06550 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G34580 | PredictedPhenotypic Enhancement | FSW = 0.0286
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | UNKNOWN PROTEIN |
AT4G27130 | PredictedPhenotypic Suppression | FSW = 0.0419
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G45620 | PredictedPhenotypic Suppression | FSW = 0.0310
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
ATCG00905 | PredictedPhenotypic Enhancement | FSW = 0.0385
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT5G41610 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | ATCHX18 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G26200 | Predictedtwo hybrid | FSW = 0.0923
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE TYPE 12 (INTERPROIPR013217) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS METHYLTRANSFERASE (TAIRAT1G546501) HAS 1504 BLAST HITS TO 1429 PROTEINS IN 277 SPECIES ARCHAE - 33 BACTERIA - 213 METAZOA - 664 FUNGI - 202 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT3G02200 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | PROTEASOME FAMILY PROTEIN |
AT5G62700 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454