Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08670 - ( ATP binding / hydrogen ion transporting ATP synthase rotational mechanism )
34 Proteins interacs with AT5G08670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G47030 | Experimentalbiochemical | FSW = 0.2126
| Class A:mitochondrionClass B:vacuoleplastidplasma membraneperoxisomeClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL |
AT5G08690 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1823
| Class C:vacuoleplastidplasma membranemitochondrion | ATP SYNTHASE BETA CHAIN 2 MITOCHONDRIAL |
AT5G08680 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1641
| Class C:vacuoleplastidplasma membranemitochondrion | ATP SYNTHASE BETA CHAIN MITOCHONDRIAL PUTATIVE |
AT1G78900 | PredictedAffinity Capture-MS | FSW = 0.0368
| Class C:vacuoleplastidplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G07698 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.2231
| Class C:vacuoleplastidmitochondrion | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT2G33040 | PredictedSynthetic Rescueinteraction predictionEnriched domain pair | FSW = 0.1296
| Class C:plastidmitochondrion | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
ATCG00120 | Predictedblue native page | FSW = 0.0901
| Class C:plastid | ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST |
AT1G15140 | Predictedpull down | FSW = 0.1353
| Class C:plastid | OXIDOREDUCTASE NAD-BINDING DOMAIN-CONTAINING PROTEIN |
AT1G79050 | Predictedpull down | FSW = 0.1471
| Class C:plastid | DNA REPAIR PROTEIN RECA |
AT1G15700 | Predictedpull down | FSW = 0.1492
| Class C:plastid | ATPC2 ENZYME REGULATOR |
AT2G22360 | Predictedpull down | FSW = 0.0702
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT2G25830 | Predictedpull down | FSW = 0.0557
| Class C:plastid | YEBC-RELATED |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0817
| Class C:plastid | ATHM1 ENZYME ACTIVATOR |
AT4G01310 | Predictedpull down | FSW = 0.0400
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT5G55280 | Predictedpull down | FSW = 0.1098
| Class C:plastid | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
AT1G05190 | Predictedpull down | FSW = 0.0595
| Class C:plastid | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G64300 | Predictedpull down | FSW = 0.0566
| Class C:plastid | ATGCH 34-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE/ GTP CYCLOHYDROLASE II |
ATCG00190 | Predictedpull down | FSW = 0.0101
| Class C:plastid | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
ATCG00160 | Predictedpull down | FSW = 0.0395
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0294
| Class C:plasma membraneperoxisomemitochondrion | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G13450 | Predictedinteraction prediction | FSW = 0.0391
| Class C:plasma membranemitochondrion | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT2G37620 | Predictedtwo hybrid | FSW = 0.0149
| Class C:plasma membrane | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G52640 | PredictedAffinity Capture-MSGene neighbors method | FSW = 0.0082
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G03000 | Predictedinterologs mapping | FSW = 0.0393
| Class C:peroxisome | PEX6 (PEROXIN 6) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G40660 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0880
| Class C:mitochondrion | ATP12 PROTEIN-RELATED |
AT3G10370 | Predictedpull down | FSW = 0.0556
| Class C:mitochondrion | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT2G07741 | Predictedinteraction prediction | FSW = 0.1786
| Unknown | ATPASE SUBUNIT 6 PUTATIVE |
AT2G07671 | Predictedinteraction prediction | FSW = 0.0632
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT2G34050 | Predictedtwo hybridtwo hybridin vitrotwo hybridco-fractionationCo-fractionationinteraction prediction | FSW = 0.1172
| Unknown | INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
AT1G30580 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | GTP BINDING |
AT5G48120 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | BINDING |
AT5G17270 | PredictedAffinity Capture-MS | FSW = 0.0595
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G74150 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK) |
AT1G51260 | Predictedtwo hybrid | FSW = 0.0541
| Unknown | LPAT3 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454