Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08670 - ( ATP binding / hydrogen ion transporting ATP synthase rotational mechanism )

34 Proteins interacs with AT5G08670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G47030

Experimental

biochemical

FSW = 0.2126

Class A:

mitochondrion

Class B:

vacuole

plastid

plasma membrane

peroxisome

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL
AT5G08690

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.1823

Class C:

vacuole

plastid

plasma membrane

mitochondrion

ATP SYNTHASE BETA CHAIN 2 MITOCHONDRIAL
AT5G08680

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.1641

Class C:

vacuole

plastid

plasma membrane

mitochondrion

ATP SYNTHASE BETA CHAIN MITOCHONDRIAL PUTATIVE
AT1G78900

Predicted

Affinity Capture-MS

FSW = 0.0368

Class C:

vacuole

plastid

plasma membrane

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G07698

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

FSW = 0.2231

Class C:

vacuole

plastid

mitochondrion

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT2G33040

Predicted

Synthetic Rescue

interaction prediction

Enriched domain pair

FSW = 0.1296

Class C:

plastid

mitochondrion

ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC)
ATCG00120Predicted

blue native page

FSW = 0.0901

Class C:

plastid

ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST
AT1G15140

Predicted

pull down

FSW = 0.1353

Class C:

plastid

OXIDOREDUCTASE NAD-BINDING DOMAIN-CONTAINING PROTEIN
AT1G79050

Predicted

pull down

FSW = 0.1471

Class C:

plastid

DNA REPAIR PROTEIN RECA
AT1G15700

Predicted

pull down

FSW = 0.1492

Class C:

plastid

ATPC2 ENZYME REGULATOR
AT2G22360

Predicted

pull down

FSW = 0.0702

Class C:

plastid

DNAJ HEAT SHOCK FAMILY PROTEIN
AT2G25830

Predicted

pull down

FSW = 0.0557

Class C:

plastid

YEBC-RELATED
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0817

Class C:

plastid

ATHM1 ENZYME ACTIVATOR
AT4G01310

Predicted

pull down

FSW = 0.0400

Class C:

plastid

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G55280

Predicted

pull down

FSW = 0.1098

Class C:

plastid

FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT1G05190

Predicted

pull down

FSW = 0.0595

Class C:

plastid

EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G64300

Predicted

pull down

FSW = 0.0566

Class C:

plastid

ATGCH 34-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE/ GTP CYCLOHYDROLASE II
ATCG00190Predicted

pull down

FSW = 0.0101

Class C:

plastid

CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00160Predicted

pull down

FSW = 0.0395

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0294

Class C:

plasma membrane

peroxisome

mitochondrion

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G13450

Predicted

interaction prediction

FSW = 0.0391

Class C:

plasma membrane

mitochondrion

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G37620

Predicted

two hybrid

FSW = 0.0149

Class C:

plasma membrane

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640

Predicted

Affinity Capture-MS

Gene neighbors method

FSW = 0.0082

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G03000

Predicted

interologs mapping

FSW = 0.0393

Class C:

peroxisome

PEX6 (PEROXIN 6) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G40660

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0880

Class C:

mitochondrion

ATP12 PROTEIN-RELATED
AT3G10370

Predicted

pull down

FSW = 0.0556

Class C:

mitochondrion

SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT2G07741

Predicted

interaction prediction

FSW = 0.1786

Unknown

ATPASE SUBUNIT 6 PUTATIVE
AT2G07671

Predicted

interaction prediction

FSW = 0.0632

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT2G34050

Predicted

two hybrid

two hybrid

in vitro

two hybrid

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.1172

Unknown

INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT1G30580

Predicted

Affinity Capture-MS

FSW = 0.0226

Unknown

GTP BINDING
AT5G48120

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

BINDING
AT5G17270

Predicted

Affinity Capture-MS

FSW = 0.0595

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G74150

Predicted

two hybrid

FSW = 0.0197

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK)
AT1G51260

Predicted

two hybrid

FSW = 0.0541

Unknown

LPAT3 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454