Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09230 - ( SRT2 (SIRTUIN 2) DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding )
32 Proteins interacs with AT5G09230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02090 | Predictedtwo hybridtwo hybrid | FSW = 0.0120
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT4G39080 | Predictedtwo hybridtwo hybrid | FSW = 0.1153
| Unknown | VHA-A3 (VACUOLAR PROTON ATPASE A3) ATPASE |
AT5G45130 | Predictedtwo hybridtwo hybrid | FSW = 0.0393
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | UNKNOWN PROTEIN |
AT5G16150 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G17810 | Predictedtwo hybridtwo hybrid | FSW = 0.0457
| Unknown | DIHYDROOROTATE DEHYDROGENASE FAMILY PROTEIN / DIHYDROOROTATE OXIDASE FAMILY PROTEIN |
AT4G38740 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1041
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0901
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0107
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0373
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0624
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0769
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G72050 | PredictedGene fusion method | FSW = 0.0131
| Unknown | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.0279
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT5G13430 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE |
AT5G64390 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | HEN4 (HUA ENHANCER 4) RNA BINDING / NUCLEIC ACID BINDING |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G59410 | Predictedtwo hybridtwo hybrid | FSW = 0.0229
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G46190 | Predictedtwo hybrid | FSW = 0.0217
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.0543
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G17140 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | TROPOMYOSIN-RELATED |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.0560
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.0337
| Unknown | NUCLEOTIDE BINDING |
AT3G04710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0780
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G22142 | PredictedPhenotypic Enhancement | FSW = 0.0803
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT3G22590 | PredictedPhenotypic Suppression | FSW = 0.0581
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT2G44150 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0894
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT5G26680 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0361
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G67320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1358
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0587
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G64550 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | LORICRIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454