Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G09290 - ( 3(2)5-bisphosphate nucleotidase putative / inositol polyphosphate 1-phosphatase putative )
21 Proteins interacs with AT5G09290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedPhenotypic Suppression | FSW = 0.0217
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT4G05090 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0664
| Unknown | INOSITOL MONOPHOSPHATASE FAMILY PROTEIN |
AT5G63980 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2273
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
ATCG00180 | Predictedpull down | FSW = 0.0113
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
AT2G47000 | PredictedPhenotypic Suppression | FSW = 0.0180
| Unknown | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
AT1G20140 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G41380 | PredictedPhenotypic Suppression | FSW = 0.0222
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT2G16930 | Predictedpull down | FSW = 0.0444
| Unknown | RIBOSOMAL PROTEIN L27 FAMILY PROTEIN |
AT4G04950 | Predictedpull down | FSW = 0.0335
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT1G31300 | PredictedPhenotypic Enhancement | FSW = 0.0513
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT2G21250 | PredictedPhenotypic Suppression | FSW = 0.0062
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.0073
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G04710 | PredictedSynthetic Rescue | FSW = 0.0090
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G25950 | PredictedPhenotypic Enhancement | FSW = 0.0206
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.0176
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G59410 | PredictedSynthetic Rescue | FSW = 0.0102
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G20630 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT5G64000 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3704
| Unknown | SAL2 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT5G63990 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3704
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G54390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3704
| Unknown | AHL (ARABIDOPSIS HAL2-LIKE) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454