Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09290 - ( 3(2)5-bisphosphate nucleotidase putative / inositol polyphosphate 1-phosphatase putative )

21 Proteins interacs with AT5G09290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

Phenotypic Suppression

FSW = 0.0217

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT4G05090

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0664

Unknown

INOSITOL MONOPHOSPHATASE FAMILY PROTEIN
AT5G63980

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2273

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
ATCG00180Predicted

pull down

FSW = 0.0113

Unknown

RNA POLYMERASE BETA SUBUNIT-1
AT2G47000

Predicted

Phenotypic Suppression

FSW = 0.0180

Unknown

ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT1G20140

Predicted

Synthetic Lethality

FSW = 0.0222

Unknown

ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G41380

Predicted

Phenotypic Suppression

FSW = 0.0222

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT2G16930

Predicted

pull down

FSW = 0.0444

Unknown

RIBOSOMAL PROTEIN L27 FAMILY PROTEIN
AT4G04950

Predicted

pull down

FSW = 0.0335

Unknown

THIOREDOXIN FAMILY PROTEIN
AT1G31300

Predicted

Phenotypic Enhancement

FSW = 0.0513

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT2G21250

Predicted

Phenotypic Suppression

FSW = 0.0062

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT3G02000

Predicted

Phenotypic Enhancement

FSW = 0.0073

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G04710

Predicted

Synthetic Rescue

FSW = 0.0090

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT4G25950

Predicted

Phenotypic Enhancement

FSW = 0.0206

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.0237

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0176

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G59410

Predicted

Synthetic Rescue

FSW = 0.0102

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G20630

Predicted

two hybrid

FSW = 0.0533

Unknown

UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT5G64000

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3704

Unknown

SAL2 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G63990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3704

Unknown

3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE
AT5G54390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3704

Unknown

AHL (ARABIDOPSIS HAL2-LIKE) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454