Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09300 - ( 2-oxoisovalerate dehydrogenase putative / 3-methyl-2-oxobutanoate dehydrogenase putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit putative )

6 Proteins interacs with AT5G09300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G50850

Predicted

two hybrid

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0790

Class C:

mitochondrion

MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT1G59900

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1572

Class C:

mitochondrion

AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT1G24180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2238

Class C:

mitochondrion

IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT3G44340

Predicted

two hybrid

two hybrid

FSW = 0.0334

Unknown

CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT4G32640

Predicted

two hybrid

FSW = 0.0556

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G21400

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0556

Unknown

2-OXOISOVALERATE DEHYDROGENASE PUTATIVE / 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE PUTATIVE / BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE E1 ALPHA SUBUNIT PUTATIVE

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454