Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09470 - ( mitochondrial substrate carrier family protein )

8 Proteins interacs with AT5G09470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1569

Class C:

mitochondrion

DICARBOXYLATE/TRICARBOXYLATE CARRIER (DTC)
AT2G22500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1233

Class C:

mitochondrion

UCP5 (UNCOUPLING PROTEIN 5) BINDING
AT2G37890

Predicted

Gene fusion method

Co-expression

FSW = 0.3571

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0020

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G62500

Predicted

Affinity Capture-MS

FSW = 0.0661

Unknown

ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING
AT1G08290

Predicted

Gene fusion method

FSW = 0.3247

Unknown

ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3)
AT2G26060

Predicted

Gene fusion method

FSW = 0.1832

Unknown

EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING
AT5G60940

Predicted

Gene fusion method

FSW = 0.1848

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454