Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09550 - ( RAB GDP-dissociation inhibitor )
29 Proteins interacs with AT5G09550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.2143
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT2G44610 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.1224
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.1225
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G17170 | Predictedin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1923
| Unknown | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE |
AT1G16920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.1736
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT5G45130 | Predictedin vitroAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.1192
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT4G04350 | Predictedinteraction prediction | FSW = 0.0208
| Unknown | EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G16100 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.1846
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT1G07670 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0648
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G12370 | PredictedSynthetic Lethality | FSW = 0.1567
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT1G09630 | Predictedin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1296
| Unknown | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING |
AT3G09900 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybridSynthetic Lethalityinteraction predictionEnriched domain pairCo-expression | FSW = 0.2025
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G71820 | PredictedSynthetic Lethality | FSW = 0.1465
| Unknown | SEC6 |
AT5G59840 | Predictedin vitroAffinity Capture-MS | FSW = 0.1961
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT4G18430 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.1340
| Unknown | ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING |
AT1G06960 | Predictedinteraction prediction | FSW = 0.0048
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G18760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0154
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G11120 | Predictedtwo hybridtwo hybrid | FSW = 0.0556
| Unknown | TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE |
AT5G03520 | Predictedin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.2365
| Unknown | ATRAB8C GTP BINDING |
AT3G54840 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.0659
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G05180 | Predictedinteraction prediction | FSW = 0.0127
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G04200 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | UNKNOWN PROTEIN |
AT5G46025 | Predictedin vitroAffinity Capture-MS | FSW = 0.0290
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT1G21170 | PredictedSynthetic Lethality | FSW = 0.1773
| Unknown | SEC5B |
AT2G36300 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1408
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G25230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0100
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.1232
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G10260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0629
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G55090 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454