Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09550 - ( RAB GDP-dissociation inhibitor )

29 Proteins interacs with AT5G09550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02130

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2143

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT2G44610

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1224

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT1G12360

Predicted

Synthetic Lethality

FSW = 0.1225

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT4G17170

Predicted

in vitro

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.1923

Unknown

RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT1G16920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1736

Unknown

ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT5G45130

Predicted

in vitro

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Enriched domain pair

Co-expression

FSW = 0.1192

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT4G04350

Predicted

interaction prediction

FSW = 0.0208

Unknown

EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G16100

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1846

Unknown

ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT1G07670

Predicted

Phenotypic Suppression

interologs mapping

FSW = 0.0648

Unknown

CALCIUM-TRANSPORTING ATPASE
AT5G12370

Predicted

Synthetic Lethality

FSW = 0.1567

Unknown

SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT1G09630

Predicted

in vitro

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.1296

Unknown

ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT3G09900

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Synthetic Lethality

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2025

Unknown

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G71820

Predicted

Synthetic Lethality

FSW = 0.1465

Unknown

SEC6
AT5G59840

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1961

Unknown

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G18430

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.1340

Unknown

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT1G06960

Predicted

interaction prediction

FSW = 0.0048

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G18760

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0154

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G11120

Predicted

two hybrid

two hybrid

FSW = 0.0556

Unknown

TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE
AT5G03520

Predicted

in vitro

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.2365

Unknown

ATRAB8C GTP BINDING
AT3G54840

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0659

Unknown

ARA6 GTP BINDING / GTPASE
AT1G05180

Predicted

interaction prediction

FSW = 0.0127

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G04200

Predicted

two hybrid

FSW = 0.0357

Unknown

UNKNOWN PROTEIN
AT5G46025

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0290

Unknown

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT1G21170Predicted

Synthetic Lethality

FSW = 0.1773

Unknown

SEC5B
AT2G36300

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1408

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT3G25230

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0100

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G09350

Predicted

Synthetic Lethality

FSW = 0.1232

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G10260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.0629

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G55090

Predicted

Affinity Capture-MS

FSW = 0.0390

Unknown

MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454