Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09630 - ( protein binding / zinc ion binding )

81 Proteins interacs with AT5G09630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

Affinity Capture-MS

FSW = 0.0375

Unknown

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.6071

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT3G49010

Predicted

Phenotypic Suppression

FSW = 0.0111

Unknown

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.5015

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G56190

Predicted

Affinity Capture-MS

FSW = 0.4487

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.5790

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G28710

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0578

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.5570

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.1571

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT3G08950

Predicted

Affinity Capture-MS

FSW = 0.5669

Unknown

ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.5312

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.4226

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.6365

Unknown

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.5109

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT2G39290

Predicted

Affinity Capture-MS

FSW = 0.0910

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT2G31170

Predicted

Affinity Capture-MS

FSW = 0.1631

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT2G29690

Predicted

Affinity Capture-MS

FSW = 0.0328

Unknown

ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.6075

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.3603

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.4389

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G45420

Predicted

Affinity Capture-MS

FSW = 0.5145

Unknown

MYB FAMILY TRANSCRIPTION FACTOR
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.4983

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.5566

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G14120

Predicted

Affinity Capture-MS

FSW = 0.1045

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.3937

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G50310

Predicted

Affinity Capture-MS

FSW = 0.3674

Unknown

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370

Predicted

Affinity Capture-MS

FSW = 0.6083

Unknown

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.1807

Unknown

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.3594

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT5G12350

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1201

Unknown

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.5985

Unknown

ZINC ION BINDING
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.4765

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G47640

Predicted

Affinity Capture-MS

FSW = 0.0704

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT5G59870

Predicted

Affinity Capture-MS

FSW = 0.6509

Unknown

HTA6 DNA BINDING
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.4535

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT3G14120

Predicted

two hybrid

FSW = 0.0282

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEAR PORE PROTEIN 84/107 (INTERPROIPR007252) HAS 207 BLAST HITS TO 206 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 123 FUNGI - 57 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK)
AT1G10320

Predicted

two hybrid

FSW = 0.0169

Unknown

U2 SNRNP AUXILIARY FACTOR-RELATED
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.4933

Unknown

HISTONE H2B PUTATIVE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.4446

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.5509

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.4266

Unknown

BINDING
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.2735

Unknown

A37 PROTEIN HETERODIMERIZATION
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.5807

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.5428

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT2G24040

Predicted

Affinity Capture-MS

FSW = 0.6258

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT5G47880

Predicted

Affinity Capture-MS

FSW = 0.5582

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT4G09300

Predicted

two hybrid

FSW = 0.0212

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN FLOWER EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G611506) HAS 369 BLAST HITS TO 369 PROTEINS IN 108 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 175 FUNGI - 55 PLANTS - 90 VIRUSES - 0 OTHER EUKARYOTES - 47 (SOURCE NCBI BLINK)
AT1G33090

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1370

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G33110

Predicted

Affinity Capture-MS

FSW = 0.5636

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G51770

Predicted

Affinity Capture-MS

FSW = 0.6260

Unknown

UNKNOWN PROTEIN
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.6032

Unknown

CORNICHON FAMILY PROTEIN
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.5606

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.5321

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G78970

Predicted

Phenotypic Suppression

FSW = 0.1472

Unknown

LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.4903

Unknown

ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G20280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0359

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.5338

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.4275

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G08650

Predicted

Synthetic Rescue

FSW = 0.0479

Unknown

METAL TRANSPORTER FAMILY PROTEIN
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.4639

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.4329

Unknown

ATATG18A
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.4880

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.5614

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G53900

Predicted

Affinity Capture-MS

FSW = 0.1135

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G76720

Predicted

Affinity Capture-MS

FSW = 0.5967

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT3G06470

Predicted

biochemical

FSW = 0.0112

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G12690

Predicted

Affinity Capture-MS

FSW = 0.5928

Unknown

AGC15 (AGC KINASE 15) KINASE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.4657

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.4574

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.4892

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.4536

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510

Predicted

Affinity Capture-MS

FSW = 0.3822

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT4G02120

Predicted

interologs mapping

FSW = 0.0087

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT4G17770

Predicted

Affinity Capture-MS

FSW = 0.5783

Unknown

ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G33070

Predicted

Affinity Capture-MS

FSW = 0.1271

Unknown

PYRUVATE DECARBOXYLASE PUTATIVE
AT5G05420

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE
AT5G19150

Predicted

Affinity Capture-MS

FSW = 0.1451

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.4484

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.4722

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT2G22690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0223

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT4G37880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0639

Unknown

PROTEIN BINDING / ZINC ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454