Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09650 - ( AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) inorganic diphosphatase/ pyrophosphatase )

35 Proteins interacs with AT5G09650
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.0115

Class C:

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G07110

Predicted

Affinity Capture-MS

FSW = 0.0355

Class C:

plastid

60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT4G08870

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0308

Class C:

plastid

ARGINASE PUTATIVE
AT2G47250

Predicted

Affinity Capture-MS

FSW = 0.0348

Class C:

plastid

RNA HELICASE PUTATIVE
AT5G58230

Predicted

Affinity Capture-Western

FSW = 0.0370

Class C:

plastid

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT5G60390

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0147

Class C:

plasma membrane

cytosol

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.0306

Class C:

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07940Predicted

two hybrid

two hybrid

FSW = 0.0296

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G10300

Predicted

two hybrid

FSW = 0.0468

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G43810

Predicted

Affinity Capture-MS

Reconstituted Complex

interaction prediction

FSW = 0.0110

Class C:

plasma membrane

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0123

Class C:

plasma membrane

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT1G02920

Predicted

Affinity Capture-MS

FSW = 0.1000

Class C:

cytosol

GSTF7 COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE
AT5G57015

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0094

Class C:

cytosol

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0126

Class C:

cytosol

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT2G04940

Predicted

two hybrid

FSW = 0.0196

Unknown

SCRAMBLASE-RELATED
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0661

Unknown

CHC1
AT1G17590

Predicted

Affinity Capture-MS

FSW = 0.0183

Unknown

NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR
AT3G12810

Predicted

two hybrid

two hybrid

FSW = 0.0076

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G54910

Predicted

Affinity Capture-MS

FSW = 0.0246

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0226

Unknown

RNA HELICASE PUTATIVE
AT5G18620

Predicted

Affinity Capture-Western

FSW = 0.0286

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT5G19310

Predicted

Affinity Capture-Western

FSW = 0.0456

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT2G34720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0128

Unknown

NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT4G16700

Predicted

two hybrid

two hybrid

FSW = 0.0191

Unknown

PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE
AT4G19190

Predicted

two hybrid

two hybrid

FSW = 0.0264

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G20325

Predicted

two hybrid

FSW = 0.0231

Unknown

UNKNOWN PROTEIN
AT5G22760

Predicted

co-fractionation

Co-fractionation

Reconstituted Complex

FSW = 0.0824

Unknown

PHD FINGER FAMILY PROTEIN
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.0226

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT1G16350

Predicted

Affinity Capture-MS

FSW = 0.0291

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT2G28360

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT3G13970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0086

Unknown

APG12B (AUTOPHAGY 12 B)
AT5G62030

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN
AT1G07990

Predicted

Affinity Capture-MS

FSW = 0.0440

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G54210

Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT3G18430

Predicted

interaction prediction

FSW = 0.0314

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454