Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09650 - ( AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) inorganic diphosphatase/ pyrophosphatase )
35 Proteins interacs with AT5G09650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.0115
| Class C:plastidplasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G07110 | PredictedAffinity Capture-MS | FSW = 0.0355
| Class C:plastid | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
AT4G08870 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0308
| Class C:plastid | ARGINASE PUTATIVE |
AT2G47250 | PredictedAffinity Capture-MS | FSW = 0.0348
| Class C:plastid | RNA HELICASE PUTATIVE |
AT5G58230 | PredictedAffinity Capture-Western | FSW = 0.0370
| Class C:plastid | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G60390 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0147
| Class C:plasma membranecytosol | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0306
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0296
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G10300 | Predictedtwo hybrid | FSW = 0.0468
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G43810 | PredictedAffinity Capture-MSReconstituted Complexinteraction prediction | FSW = 0.0110
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0123
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT1G02920 | PredictedAffinity Capture-MS | FSW = 0.1000
| Class C:cytosol | GSTF7 COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0094
| Class C:cytosol | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0126
| Class C:cytosol | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | SCRAMBLASE-RELATED |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0661
| Unknown | CHC1 |
AT1G17590 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
AT3G12810 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G54910 | PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0226
| Unknown | RNA HELICASE PUTATIVE |
AT5G18620 | PredictedAffinity Capture-Western | FSW = 0.0286
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT5G19310 | PredictedAffinity Capture-Western | FSW = 0.0456
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT2G34720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0128
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT4G16700 | Predictedtwo hybridtwo hybrid | FSW = 0.0191
| Unknown | PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT4G19190 | Predictedtwo hybridtwo hybrid | FSW = 0.0264
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | UNKNOWN PROTEIN |
AT5G22760 | Predictedco-fractionationCo-fractionationReconstituted Complex | FSW = 0.0824
| Unknown | PHD FINGER FAMILY PROTEIN |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT1G16350 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT2G28360 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0086
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT5G62030 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT3G18430 | Predictedinteraction prediction | FSW = 0.0314
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454