Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09860 - ( nuclear matrix protein-related )
37 Proteins interacs with AT5G09860| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G79280
   | PredictedSynthetic Rescue | FSW = 0.1011
| Class C:nucleus | NUA (NUCLEAR PORE ANCHOR) |
| AT5G11170
| PredictedSynthetic LethalitySynthetic Lethalityinterologs mappinginterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted ComplexSynthetic Lethalitytwo hybrid | FSW = 0.1686
| Class C:nucleus | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G05120
| PredictedPhenotypic Enhancement | FSW = 0.0822
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT2G41630
| PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0687
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
| AT3G06720
| Predictedinteraction prediction | FSW = 0.0246
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT5G37720
| Predictedin vitro | FSW = 0.0475
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G16980
| PredictedSynthetic Rescue | FSW = 0.0907
| Class C:nucleus | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT1G11100
| PredictedAffinity Capture-MS | FSW = 0.0627
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED |
| AT2G38560
| PredictedSynthetic Rescue | FSW = 0.1114
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
| AT1G07660 | PredictedSynthetic Lethality | FSW = 0.0264
| Unknown | HISTONE H4 |
| AT4G35800
| PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0948
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G36160
| PredictedSynthetic Lethality | FSW = 0.0211
| Unknown | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
| AT3G12050
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0100
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
| AT1G75510
| PredictedAffinity Capture-Western | FSW = 0.1004
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
| AT5G41150
| PredictedSynthetic Rescue | FSW = 0.0519
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
| AT3G23890
| Predictedinteraction predictionCo-expression | FSW = 0.0595
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
| AT4G21710
| PredictedSynthetic RescueAffinity Capture-WesternSynthetic Rescue | FSW = 0.0916
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G02530
| PredictedSynthetic Lethalityin vitroAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalitytwo hybridCo-expression | FSW = 0.0803
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G12280
| Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0014
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT5G56130
| Predictedin vitroAffinity Capture-MSCo-expression | FSW = 0.0952
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G24706
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinterologs mappinginteraction prediction | FSW = 0.0823
| Unknown | UNKNOWN PROTEIN |
| AT3G49660
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0566
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G02690
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0351
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT3G12990
| PredictedAffinity Capture-Western | FSW = 0.1023
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
| AT1G54440
| PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.1938
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT1G79730
| PredictedAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0831
| Unknown | ELF7 (EARLY FLOWERING 7) |
| AT5G10270
| PredictedAffinity Capture-Western | FSW = 0.1135
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
| AT3G58560
| PredictedAffinity Capture-WesternSynthetic LethalityCo-expression | FSW = 0.0567
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT3G22590
| PredictedAffinity Capture-Westernsynthetic growth defectCo-expression | FSW = 0.1259
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT1G10930
| PredictedPhenotypic Enhancement | FSW = 0.0706
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT4G15475
| PredictedPhenotypic Enhancement | FSW = 0.0818
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
| AT5G55300
| Predictedsynthetic growth defectsynthetic growth defectsynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.0947
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
| AT5G53770
| PredictedSynthetic Lethality | FSW = 0.0247
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
| AT5G08565
| PredictedSynthetic Lethality | FSW = 0.1829
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
| AT1G09200 | PredictedSynthetic LethalityCo-expression | FSW = 0.0263
| Unknown | HISTONE H3 |
| AT5G63920
| Predictedinteraction predictionCo-expression | FSW = 0.0545
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
| AT5G11200
| Predictedinteraction prediction | FSW = 0.1037
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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