Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G09880 - ( RNA recognition motif (RRM)-containing protein )

21 Proteins interacs with AT5G09880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G02490

Predicted

two hybrid

FSW = 0.0069

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT3G02920

Predicted

two hybrid

FSW = 0.0215

Unknown

REPLICATION PROTEIN-RELATED
AT2G18510

Predicted

two hybrid

FSW = 0.0128

Unknown

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G45640

Predicted

two hybrid

FSW = 0.0247

Unknown

SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR
AT5G66010

Predicted

two hybrid

FSW = 0.0444

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G67590

Predicted

two hybrid

FSW = 0.0345

Unknown

FRO1 (FROSTBITE1) NADH DEHYDROGENASE (UBIQUINONE)
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0085

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G65660

Predicted

two hybrid

FSW = 0.0436

Unknown

SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING
AT2G44200

Predicted

two hybrid

FSW = 0.1277

Unknown

UNKNOWN PROTEIN
AT4G15180

Predicted

two hybrid

FSW = 0.1333

Unknown

SDG2 (SET DOMAIN-CONTAINING PROTEIN 2)
AT4G19190

Predicted

two hybrid

FSW = 0.1001

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G37120

Predicted

two hybrid

FSW = 0.2462

Unknown

SMP2 SINGLE-STRANDED RNA BINDING
AT1G53710

Predicted

two hybrid

FSW = 0.0230

Unknown

HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G24740

Predicted

two hybrid

FSW = 0.1089

Unknown

AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT4G25020

Predicted

two hybrid

FSW = 0.1600

Unknown

KOW DOMAIN-CONTAINING PROTEIN / D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT4G32660

Predicted

two hybrid

FSW = 0.1058

Unknown

AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G47240

Predicted

two hybrid

FSW = 0.0424

Unknown

ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT5G47650

Predicted

two hybrid

FSW = 0.0411

Unknown

ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE
AT5G47430

Predicted

two hybrid

FSW = 0.0267

Unknown

ZINC ION BINDING
AT5G41170

Predicted

Gene fusion method

FSW = 0.0960

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT4G25270

Predicted

Gene fusion method

FSW = 0.0683

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454