Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G09920 - ( NRPB4 DNA-directed RNA polymerase )
26 Proteins interacs with AT5G09920| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G54610
   | Predictedsynthetic growth defect | FSW = 0.0796
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT3G16980
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethalityinteraction prediction | FSW = 0.4176
| Class C:nucleus | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT2G15430
| PredictedAffinity Capture-MSReconstituted ComplexCo-purificationinteraction prediction | FSW = 0.2660
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT2G34210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1966
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
| AT2G38560
| PredictedSynthetic Lethality | FSW = 0.1952
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
| AT4G35800
| PredictedCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-crystal StructureCo-purificationinteraction prediction | FSW = 0.2519
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G75510
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3165
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
| AT5G59180
| Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mappinginterologs mappinginterologs mappingCo-purificationCo-crystal StructureCo-crystal StructureCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationReconstituted Complexinterologs mappingSynthetic Lethalitytwo hybridEnriched domain pairCo-expression | FSW = 0.6128
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
| AT3G52090
| PredictedAffinity Capture-MS | FSW = 0.5538
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT2G15400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5321
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT4G21710
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3603
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G41910
| PredictedAffinity Capture-MS | FSW = 0.2830
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
| AT5G58003
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3902
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
| AT2G44150
| PredictedAffinity Capture-MS | FSW = 0.1687
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
| AT5G08565
| PredictedAffinity Capture-MS | FSW = 0.2685
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
| AT3G22320
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4375
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G54250
| PredictedAffinity Capture-MS | FSW = 0.4410
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
| AT1G11475
| PredictedAffinity Capture-MS | FSW = 0.3756
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT2G04630
| PredictedAffinity Capture-MStwo hybrid | FSW = 0.4447
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G49540
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.1738
| Unknown | NUCLEOTIDE BINDING |
| AT4G35890
| Predictedinterologs mapping | FSW = 0.0263
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT5G46030
| PredictedSynthetic Lethality | FSW = 0.0679
| Unknown | UNKNOWN PROTEIN |
| AT1G54140
| PredictedSynthetic Lethality | FSW = 0.0580
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT5G10790
| PredictedSynthetic Lethality | FSW = 0.0977
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
| AT5G01230
| Predictedtwo hybridinteraction prediction | FSW = 0.0368
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT5G13680
| Predictedinteraction prediction | FSW = 0.1846
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.412 seconds to be build.
This page takes 0.412 seconds to be build.