Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G10080 - ( aspartyl protease family protein )

8 Proteins interacs with AT5G10080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G23190

Predicted

Synthetic Lethality

FSW = 0.1620

Class C:

plasma membrane

PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT2G39480

Predicted

synthetic growth defect

FSW = 0.0340

Class C:

plasma membrane

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G17800

Predicted

Affinity Capture-MS

FSW = 0.0159

Unknown

ARAC1 GTP BINDING
AT1G18830Predicted

synthetic growth defect

FSW = 0.0272

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G03160

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-Western

two hybrid

FSW = 0.0463

Unknown

ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G31260

Predicted

synthetic growth defect

FSW = 0.0246

Unknown

APG9 (AUTOPHAGY 9)
AT4G25150

Predicted

Affinity Capture-MS

FSW = 0.0324

Unknown

ACID PHOSPHATASE PUTATIVE
AT3G51350

Predicted

Gene fusion method

FSW = 0.0556

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454