Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G10810 - ( ATER )

15 Proteins interacs with AT5G10810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G29900

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0516

Unknown

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT1G75950

Predicted

two hybrid

FSW = 0.0264

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G06270

Predicted

two hybrid

FSW = 0.0556

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G24310

Predicted

two hybrid

two hybrid

FSW = 0.0202

Unknown

UNKNOWN PROTEIN
AT1G71230

Predicted

two hybrid

FSW = 0.0914

Unknown

CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING
AT1G22920

Predicted

two hybrid

Co-expression

FSW = 0.0729

Unknown

CSN5A (COP9 SIGNALOSOME 5A)
AT4G25550

Predicted

two hybrid

two hybrid

FSW = 0.0370

Unknown

PROTEIN BINDING
AT1G53710

Predicted

two hybrid

two hybrid

FSW = 0.0307

Unknown

HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G05830

Predicted

two hybrid

two hybrid

FSW = 0.1111

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT5G42190

Predicted

two hybrid

two hybrid

FSW = 0.0103

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G47240

Predicted

two hybrid

two hybrid

FSW = 0.0557

Unknown

ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT5G47650

Predicted

two hybrid

FSW = 0.0541

Unknown

ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE
AT2G17870

Predicted

Affinity Capture-MS

FSW = 0.0423

Unknown

COLD-SHOCK DNA-BINDING FAMILY PROTEIN
AT4G36020

Predicted

Affinity Capture-MS

FSW = 0.0185

Unknown

CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G54940

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454