Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11170 - ( ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )
24 Proteins interacs with AT5G11170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1793
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT5G09860 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappinginterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted ComplexSynthetic Lethalitytwo hybrid | FSW = 0.1686
| Class C:nucleus | NUCLEAR MATRIX PROTEIN-RELATED |
AT3G13920 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1892
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G19760 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4481
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE |
AT1G03190 | PredictedSynthetic Rescue | FSW = 0.0447
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G54270 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1511
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G47250 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G53110 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4043
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0130
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G24706 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-purificationinterologs mappingSynthetic Lethality | FSW = 0.0292
| Unknown | UNKNOWN PROTEIN |
AT5G02530 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted Complex | FSW = 0.0394
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G10270 | PredictedAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0566
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT3G22590 | Predictedinterologs mapping | FSW = 0.0298
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G54440 | Predictedsynthetic growth defectsynthetic growth defectSynthetic LethalitySynthetic Rescue | FSW = 0.1531
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT5G40490 | Predictedtwo hybrid | FSW = 0.0394
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G11200 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.6465
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G60990 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.4448
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH10) |
AT1G51380 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5602
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G02065 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5602
| Unknown | DEAD/DEAH BOX HELICASE FAMILY PROTEIN |
AT4G00660 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1075
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G16280 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1587
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G61240 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2963
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH12) |
AT3G14100 | PredictedGene fusion method | FSW = 0.0330
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT1G17140 | PredictedGene fusion method | FSW = 0.0204
| Unknown | TROPOMYOSIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454