Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11200 - ( DEAD/DEAH box helicase putative )
34 Proteins interacs with AT5G11200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1613
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G54270 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1190
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G42790 | Predictedtwo hybridinteraction prediction | FSW = 0.0175
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G53110 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3913
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT5G59950 | Predictedinteraction prediction | FSW = 0.0082
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G37720 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted Complexinterologs mappingAffinity Capture-MS | FSW = 0.0413
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G35910 | Predictedsynthetic growth defectSynthetic LethalitySynthetic Rescuesynthetic growth defect | FSW = 0.0390
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G09860 | Predictedinteraction prediction | FSW = 0.1037
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT1G03190 | PredictedSynthetic Rescue | FSW = 0.0444
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G11170 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.6465
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G13920 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1498
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G19760 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3507
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE |
AT2G26940 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0098
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G29030 | Predictedtwo hybridtwo hybrid | FSW = 0.1579
| Unknown | APOPTOSIS INHIBITORY 5 (API5) FAMILY PROTEIN |
AT2G19640 | Predictedtwo hybrid | FSW = 0.0618
| Unknown | ASHR2 (ASH1-RELATED PROTEIN 2) |
AT2G34040 | Predictedtwo hybrid | FSW = 0.1579
| Unknown | APOPTOSIS INHIBITORY 5 (API5) FAMILY PROTEIN |
AT3G21820 | Predictedtwo hybrid | FSW = 0.0721
| Unknown | ATXR2 (HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2) ZINC ION BINDING |
AT5G22020 | Predictedtwo hybridtwo hybrid | FSW = 0.0270
| Unknown | STRICTOSIDINE SYNTHASE FAMILY PROTEIN |
AT5G24180 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | LIPASE CLASS 3-RELATED |
AT1G24706 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-purificationinterologs mapping | FSW = 0.0402
| Unknown | UNKNOWN PROTEIN |
AT5G10270 | PredictedAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0309
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT2G06040 | PredictedPhenotypic Enhancement | FSW = 0.0586
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT3G22590 | Predictedinterologs mapping | FSW = 0.0297
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G54380 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0855
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT1G80670 | PredictedReconstituted Complex | FSW = 0.0364
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G32010 | Predictedtwo hybrid | FSW = 0.0865
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT5G60990 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3502
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH10) |
AT3G61240 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2284
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH12) |
AT1G16280 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1235
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G51380 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4384
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT4G00660 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0819
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G02065 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4384
| Unknown | DEAD/DEAH BOX HELICASE FAMILY PROTEIN |
AT3G14100 | PredictedGene fusion method | FSW = 0.0243
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454