Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11210 - ( ATGLR25 intracellular ligand-gated ion channel )

10 Proteins interacs with AT5G11210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

in vitro

in vivo

FSW = 0.0111

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G61790

Predicted

in vivo

FSW = 0.0333

Unknown

CALNEXIN 1 (CNX1)
AT3G04120

Predicted

in vitro

FSW = 0.0239

Unknown

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G42020

Predicted

in vivo

FSW = 0.0473

Unknown

BIP2 ATP BINDING
AT1G71860

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0749

Unknown

PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE
AT5G19330

Predicted

in vivo

in vitro

FSW = 0.0723

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT2G24720

Predicted

Phylogenetic profile method

FSW = 0.0462

Unknown

ATGLR22 INTRACELLULAR LIGAND-GATED ION CHANNEL
AT3G57550

Predicted

Reconstituted Complex

in vitro

in vitro

in vivo

in vivo

in vitro

in vitro

in vivo

in vivo

in vitro

in vivo

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0824

Unknown

AGK2 (GUANYLATE KINASE) GUANYLATE KINASE
AT5G21274

Predicted

in vitro

in vivo

in vivo

in vitro

FSW = 0.0166

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT5G25060

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0821

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454