Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11260 - ( HY5 (ELONGATED HYPOCOTYL 5) DNA binding / double-stranded DNA binding / transcription factor )

14 Proteins interacs with AT5G11260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G35160

Experimental

FSW = 0.0660

Class A:

nucleus

Class B:

plasma membrane

cytosol

cytoskeleton

Class D:

plastid (p = 0.78)

 GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G32950

Experimental

two hybrid

Reconstituted Complex

two hybrid

two hybrid

two hybrid

pull down

biochemical

Reconstituted Complex

in vitro

in vitro

FSW = 0.2759

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G17609

Experimental

fluorescence acceptor donor pair

fluorescence acceptor donor pair

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.1775

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 HYH (HY5-HOMOLOG) DNA BINDING / TRANSCRIPTION FACTOR
AT4G10180

Experimental

Phenotypic Suppression

FSW = 0.1062

Class A:

nucleus

Class D:

plastid (p = 0.78)

 DET1 (DE-ETIOLATED 1) CATALYTIC
AT2G46340

Experimental

FSW = 0.0714

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER
AT2G46830

Experimental

FSW = 0.0585

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT1G56650

Experimental

synthetic growth defect

FSW = 0.1046

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G13980

Experimental

interaction detection method

FSW = 0.0471

Class B:

nucleus

endoplasmic reticulum

Class D:

nucleus (p = 0.78)

 GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT1G78600

Experimental

FSW = 0.3062

Class D:

nucleus (p = 0.78)

 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G31380

Experimental

two hybrid

fluorescence acceptor donor pair

two hybrid

FSW = 0.0832

Class D:

nucleus (p = 0.78)

 STH PROTEIN DOMAIN SPECIFIC BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G75540

Experimental

FSW = 0.0863

Class D:

nucleus (p = 0.78)

 STH2 (SALT TOLERANCE HOMOLOG2) TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G64920

Experimental

pull down

Reconstituted Complex

FSW = 0.0896

Unknown

 CIP8 (COP1-INTERACTING PROTEIN 8) PROTEIN BINDING / ZINC ION BINDING
AT1G55520

Predicted

in vitro

FSW = 0.0179

Class C:

nucleus

 TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT4G11330

Predicted

in vivo

in vitro

FSW = 0.0097

Unknown

 ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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