Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G11390 - ( unknown protein )

18 Proteins interacs with AT5G11390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19320

Experimental

two hybrid

Affinity Capture-Western

affinity technology

FSW = 0.0713

Unknown

RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT3G63130

Experimental

interaction detection method

two hybrid

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.0969

Unknown

RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING
AT1G47200

Experimental

two hybrid

Affinity Capture-MS

affinity technology

FSW = 0.2783

Unknown

WPP2
AT5G43070

Experimental

two hybrid

FSW = 0.2783

Unknown

WPP1 (WPP DOMAIN PROTEIN 1)
AT5G27940

Experimental

FSW = 0.1905

Unknown

WPP3 (WPP DOMAIN PROTEIN 3)
AT4G26450

Experimental

affinity technology

Affinity Capture-Western

FSW = 0.2727

Unknown

UNKNOWN PROTEIN
AT3G48430

Experimental

one hybrid

FSW = 0.1023

Unknown

REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G80840

Experimental

FSW = 0.1818

Unknown

WRKY40 TRANSCRIPTION FACTOR
AT2G25000

Experimental

FSW = 0.2045

Unknown

WRKY60 TRANSCRIPTION FACTOR
AT1G19350

Experimental

one hybrid

FSW = 0.1023

Unknown

BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT4G26455

Experimental

FSW = 0.4712

Unknown

WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT5G56210

Experimental

two hybrid

FSW = 0.5385

Unknown

WIP2 (WPP-DOMAIN INTERACTING PROTEIN 2) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT4G22130

Predicted

Gene fusion method

FSW = 0.1296

Unknown

SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G17840

Predicted

Gene fusion method

FSW = 0.1296

Unknown

WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / FATTY ACID TRANSPORTER
AT1G69545

Predicted

Gene fusion method

FSW = 0.3363

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G26150

Predicted

Gene fusion method

FSW = 0.2727

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G62270

Predicted

Gene fusion method

FSW = 0.0750

Unknown

ANION EXCHANGE FAMILY PROTEIN
AT1G22830

Predicted

Gene fusion method

FSW = 0.1789

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454