Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11390 - ( unknown protein )
18 Proteins interacs with AT5G11390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19320 | Experimentaltwo hybridAffinity Capture-Westernaffinity technology | FSW = 0.0713
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G63130 | Experimentalinteraction detection methodtwo hybridAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0969
| Unknown | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT1G47200 | Experimentaltwo hybridAffinity Capture-MSaffinity technology | FSW = 0.2783
| Unknown | WPP2 |
AT5G43070 | Experimentaltwo hybrid | FSW = 0.2783
| Unknown | WPP1 (WPP DOMAIN PROTEIN 1) |
AT5G27940 | Experimental | FSW = 0.1905
| Unknown | WPP3 (WPP DOMAIN PROTEIN 3) |
AT4G26450 | Experimentalaffinity technologyAffinity Capture-Western | FSW = 0.2727
| Unknown | UNKNOWN PROTEIN |
AT3G48430 | Experimentalone hybrid | FSW = 0.1023
| Unknown | REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G80840 | Experimental | FSW = 0.1818
| Unknown | WRKY40 TRANSCRIPTION FACTOR |
AT2G25000 | Experimental | FSW = 0.2045
| Unknown | WRKY60 TRANSCRIPTION FACTOR |
AT1G19350 | Experimentalone hybrid | FSW = 0.1023
| Unknown | BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT4G26455 | Experimental | FSW = 0.4712
| Unknown | WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT5G56210 | Experimentaltwo hybrid | FSW = 0.5385
| Unknown | WIP2 (WPP-DOMAIN INTERACTING PROTEIN 2) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT4G22130 | PredictedGene fusion method | FSW = 0.1296
| Unknown | SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G17840 | PredictedGene fusion method | FSW = 0.1296
| Unknown | WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / FATTY ACID TRANSPORTER |
AT1G69545 | PredictedGene fusion method | FSW = 0.3363
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G26150 | PredictedGene fusion method | FSW = 0.2727
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G62270 | PredictedGene fusion method | FSW = 0.0750
| Unknown | ANION EXCHANGE FAMILY PROTEIN |
AT1G22830 | PredictedGene fusion method | FSW = 0.1789
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454