Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11500 - ( unknown protein )
30 Proteins interacs with AT5G11500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01950 | Experimentalphage display | FSW = 0.0072
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT2G17360 | Predictedinterologs mapping | FSW = 0.0651
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0073
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT4G33650 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G58610 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1774
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT1G64190 | Predictedinterologs mapping | FSW = 0.0572
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G45145 | PredictedSynthetic Rescue | FSW = 0.2310
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1350
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0405
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G14350 | PredictedSynthetic Lethality | FSW = 0.1080
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G21700 | Predictedsynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethalitysynthetic growth defect | FSW = 0.1462
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0155
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G36170 | PredictedPhenotypic EnhancementSynthetic Rescueinterologs mapping | FSW = 0.1087
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G13900 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1095
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G54560 | PredictedPhenotypic Enhancement | FSW = 0.0231
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G66590 | PredictedSynthetic Rescue | FSW = 0.1716
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0705
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT4G29580 | Predictedsynthetic growth defectsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1623
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | PredictedSynthetic Rescueinterologs mappingSynthetic Lethality | FSW = 0.1405
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT1G29630 | Predictedinterologs mappingsynthetic growth defectAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.1152
| Unknown | NUCLEASE |
AT1G47830 | PredictedDosage Growth Defectinterologs mapping | FSW = 0.1838
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT3G06470 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G47610 | Predictedinterologs mapping | FSW = 0.2270
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G04700 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.1460
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G08160 | PredictedSynthetic Lethality | FSW = 0.1216
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0111
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G14180 | PredictedPhenotypic Enhancement | FSW = 0.0299
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G24840 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454