Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11500 - ( unknown protein )

30 Proteins interacs with AT5G11500
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01950

Experimental

phage display

FSW = 0.0072

Unknown

BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT2G17360

Predicted

interologs mapping

FSW = 0.0651

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G49010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0073

Unknown

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G26030

Predicted

two hybrid

FSW = 0.0079

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT4G33650

Predicted

two hybrid

FSW = 0.0267

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT3G58610

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1774

Unknown

KETOL-ACID REDUCTOISOMERASE
AT1G64190

Predicted

interologs mapping

FSW = 0.0572

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G45145

Predicted

Synthetic Rescue

FSW = 0.2310

Unknown

ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.1350

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.0405

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G14350

Predicted

Synthetic Lethality

FSW = 0.1080

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G21700

Predicted

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

Synthetic Lethality

synthetic growth defect

FSW = 0.1462

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G13980

Predicted

biochemical

FSW = 0.0155

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT2G36170Predicted

Phenotypic Enhancement

Synthetic Rescue

interologs mapping

FSW = 0.1087

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT3G13900

Predicted

Phenotypic Enhancement

interologs mapping

FSW = 0.1095

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G54560Predicted

Phenotypic Enhancement

FSW = 0.0231

Unknown

XIE MOTOR/ PROTEIN BINDING
AT1G66590

Predicted

Synthetic Rescue

FSW = 0.1716

Unknown

COX19 FAMILY PROTEIN
AT1G78770

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0705

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT4G29580

Predicted

synthetic growth defect

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1623

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G01770

Predicted

Synthetic Rescue

interologs mapping

Synthetic Lethality

FSW = 0.1405

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT1G29630

Predicted

interologs mapping

synthetic growth defect

Affinity Capture-Western

interologs mapping

Synthetic Rescue

FSW = 0.1152

Unknown

NUCLEASE
AT1G47830

Predicted

Dosage Growth Defect

interologs mapping

FSW = 0.1838

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT3G06470

Predicted

two hybrid

FSW = 0.0179

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G47610

Predicted

interologs mapping

FSW = 0.2270

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G04700

Predicted

two hybrid

FSW = 0.0235

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G21490

Predicted

Phenotypic Enhancement

FSW = 0.1460

Unknown

NDB3 NADH DEHYDROGENASE
AT5G08160

Predicted

Synthetic Lethality

FSW = 0.1216

Unknown

ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G66640

Predicted

biochemical

FSW = 0.0111

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G14180

Predicted

Phenotypic Enhancement

FSW = 0.0299

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G24840

Predicted

Affinity Capture-MS

FSW = 0.0090

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454