Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11570 - ( proton-dependent oligopeptide transport (POT) family protein )

19 Proteins interacs with AT5G11570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G36750

Predicted

Reconstituted Complex

FSW = 0.3000

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT1G65240

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2344

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.1878

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.2002

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G13445

Predicted

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0795

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G29800

Predicted

Phenotypic Enhancement

Affinity Capture-Western

FSW = 0.1481

Unknown

AAA-TYPE ATPASE FAMILY
AT1G29330

Predicted

Phenotypic Enhancement

FSW = 0.0692

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT2G14580

Predicted

Affinity Capture-Western

FSW = 0.0356

Unknown

ATPRB1
AT4G33730

Predicted

interologs mapping

FSW = 0.1818

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G01020

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

FSW = 0.1837

Unknown

ARV1
AT2G43460

Predicted

Affinity Capture-MS

FSW = 0.1728

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT1G08260

Predicted

Affinity Capture-MS

two hybrid

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

two hybrid

co-fractionation

Co-fractionation

interologs mapping

FSW = 0.2562

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.1449

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G76920

Predicted

Phenotypic Enhancement

FSW = 0.0622

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G01070

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Co-purification

FSW = 0.3491

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK)
AT2G46280

Predicted

interologs mapping

FSW = 0.0759

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G09800

Predicted

Phenotypic Enhancement

FSW = 0.1905

Unknown

PROTEIN BINDING
AT4G16710

Predicted

interologs mapping

interologs mapping

FSW = 0.2130

Unknown

GLYCOSYLTRANSFERASE FAMILY PROTEIN 28
AT3G17520

Predicted

Reconstituted Complex

FSW = 0.2865

Unknown

LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454