Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G11570 - ( proton-dependent oligopeptide transport (POT) family protein )
19 Proteins interacs with AT5G11570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G36750 | PredictedReconstituted Complex | FSW = 0.3000
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT1G65240 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2344
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1878
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.2002
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0795
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G29800 | PredictedPhenotypic EnhancementAffinity Capture-Western | FSW = 0.1481
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G29330 | PredictedPhenotypic Enhancement | FSW = 0.0692
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT2G14580 | PredictedAffinity Capture-Western | FSW = 0.0356
| Unknown | ATPRB1 |
AT4G33730 | Predictedinterologs mapping | FSW = 0.1818
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G01020 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1837
| Unknown | ARV1 |
AT2G43460 | PredictedAffinity Capture-MS | FSW = 0.1728
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT1G08260 | PredictedAffinity Capture-MStwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted Complextwo hybridco-fractionationCo-fractionationinterologs mapping | FSW = 0.2562
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.1449
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0622
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G01070 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexCo-purification | FSW = 0.3491
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G46280 | Predictedinterologs mapping | FSW = 0.0759
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G09800 | PredictedPhenotypic Enhancement | FSW = 0.1905
| Unknown | PROTEIN BINDING |
AT4G16710 | Predictedinterologs mappinginterologs mapping | FSW = 0.2130
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT3G17520 | PredictedReconstituted Complex | FSW = 0.2865
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454