Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11900 - ( eukaryotic translation initiation factor SUI1 family protein )
25 Proteins interacs with AT5G11900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15200 | Predictedtwo hybrid | FSW = 0.0437
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT4G01370 | Predictedbiochemical | FSW = 0.0056
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G18080 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G04840 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0082
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G25630 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0243
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G18130 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT4G31720 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G52470 | Predictedtwo hybrid | FSW = 0.0621
| Unknown | FIB1 (FIBRILLARIN 1) SNORNA BINDING |
AT5G47630 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G65290 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT2G44620 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) ACYL CARRIER/ COFACTOR BINDING / PHOSPHOPANTETHEINE BINDING |
AT1G09150 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridCo-expression | FSW = 0.0730
| Unknown | PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN |
AT2G47110 | Predictedtwo hybridtwo hybrid | FSW = 0.0388
| Unknown | UBQ6 PROTEIN BINDING |
AT3G01320 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | SNL1 (SIN3-LIKE 1) |
AT4G14710 | Predictedtwo hybridtwo hybrid | FSW = 0.0564
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT5G15020 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | SNL2 (SIN3-LIKE 2) |
AT5G39850 | Predictedtwo hybrid | FSW = 0.0664
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9C) |
AT5G43850 | Predictedtwo hybrid | FSW = 0.1214
| Unknown | ARD4 ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT3G21060 | PredictedPhenotypic Enhancement | FSW = 0.0155
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G24190 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
AT1G34370 | Predictedtwo hybrid | FSW = 0.0627
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454