Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12020 - ( HSP176II (176 KDA CLASS II HEAT SHOCK PROTEIN) )
16 Proteins interacs with AT5G12020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52640 | Predictedtwo hybrid | FSW = 0.0936
| Unknown | NICASTRIN-RELATED |
AT4G26300 | Predictedtwo hybrid | FSW = 0.0526
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G47190 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT5G41600 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | BTI3 (VIRB2-INTERACTING PROTEIN 3) |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0153
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G23000 | PredictedPhenotypic Suppression | FSW = 0.1404
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT1G63660 | Predictedtwo hybrid | FSW = 0.0138
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT4G26750 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G01580 | Predictedtwo hybrid | FSW = 0.0561
| Unknown | OSH1 (OAS HIGH ACCUMULATION 1) CATALYTIC |
AT1G71790 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT2G04845 | Predictedtwo hybrid | FSW = 0.0602
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT2G26830 | Predictedtwo hybrid | FSW = 0.0443
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT3G46220 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | UNKNOWN PROTEIN |
AT5G20270 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) RECEPTOR |
AT5G52910 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | ATIM (TIMELESS) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454